Journal articles#
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2024#
A database of the healthy human spinal cord morphometry in the PAM50 template space
Valošek J, Bédard S, Keřkovský M, Rohan T, Cohen-Adad J
Imaging Neuroscience (2024) Link to paper (Labels: image-analysis, quantitative-mri)
2023#
HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation
Heidari M, Kazerouni A, Soltany M, Azad R, Aghdam EK, Cohen-Adad J, Merhof D
Winter Conference on Applications of Computer Vision (WACV) (2023) Link to paper (Labels: image-analysis, deep-learning)
Dynamic shimming in the cervical spinal cord for multi-echo gradient-echo imaging at 3 T
Alonso-Ortiz E, Papp D, D’Astous A, Cohen-Adad J
Neuroimage: Reports (2023) Link to paper (Labels: mri-physics, shimming)
Contrast-agnostic deep learning–based registration pipeline: Validation in spinal cord multimodal MRI data
Beal E, Cohen-Adad J
Aperture Neuro (2023) Link to paper (Labels: deep-learning, image-analysis)
Pontomedullary junction as a reference for spinal cord cross-sectional area: validation across neck positions
Bédard S, Bouthillier M, Cohen-Adad J
Sci Rep (2023) Link to paper (Labels: image-analysis, neuroscience)
Effectiveness of regional diffusion MRI measures in distinguishing multiple sclerosis abnormalities within the cervical spinal cord
Snoussi H, Cohen-Adad J, Combès B, Bannier É, Tounekti S, Kerbrat A, Barillot C, Caruyer E
Brain Behav (2023) Link to paper (Labels: multiple-sclerosis, image-analysis)
An 8-channel Tx dipole and 20-channel Rx loop coil array for MRI of the cervical spinal cord at 7 Tesla
Lopez-Rios, N., Gilbert, K. M., Papp, D., Cereza, G., Foias, A., Rangaprakash, D., May, M. W., Guerin, B., Wald, L. L., Keil, B., Stockmann, J. P., Barry, R. L., & Cohen-Adad, J
NMR Biomed (2023) Link to paper (Labels: mri-physics)
2022#
Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data
Bourget M-H, Kamentsky L, Ghosh SS, Mazzamuto G, Lazari A, Markiewicz CJ, Oostenveld R, Niso G, Halchenko YO, Lipp I, Takerkart S, Toussaint P-J, Khan AR, Nilsonne G, Castelli FM, The BIDS Maintainers, Cohen-Adad J
Front Neurosci (2022) Link to paper (Labels: microscopy)
Rapid, automated nerve histomorphometry through open-source artificial intelligence
Daeschler SC, Bourget M-H, Derakhshan D, Sharma V, Asenov SI, Gordon T, Cohen-Adad J, Borschel GH
Sci Rep (2022) Link to paper (Labels: microscopy, deep-learning, image-analysis)
Comparison of multicenter MRI protocols for visualizing the spinal cord gray matter
Cohen-Adad J, Alonso-Ortiz E, Alley S, Lagana MM, Baglio F, Vannesjo SJ, Karbasforoushan H, Seif M, Seifert AC, Xu J, Kim J-W, Labounek R, Vojtíšek L, Dostál M, Valošek J, Samson RS, Grussu F, Battiston M, Gandini Wheeler-Kingshott CAM, Yiannakas MC, Gilbert G, Schneider T, Johnson B, Prados F
Magn Reson Med (2022) Link to paper (Labels: mri-physics)
Histology-informed automatic parcellation of white matter tracts in the rat spinal cord
Nami H, Perone CS, Cohen-Adad J
Front Neuroanat (2022) Link to paper (Labels: microscopy)
Vendor-neutral sequences and fully transparent workflows improve inter-vendor reproducibility of quantitative MRI
Karakuzu A, Biswas L, Cohen-Adad J, Stikov N
Magn Reson Med (2022) Link to paper (Labels: mri-physics)
Automatic measure and normalization of spinal cord cross-sectional area using the pontomedullary junction
Bédard S, Cohen-Adad J
Front Neuroimaging (2022) Link to paper (Labels: image-analysis)
Shimming Toolbox: An open-source software toolbox for B0 and B1 shimming in Magnetic Resonance Imaging
D’Astous A, Cereza G, Papp D, Gilbert KM, Stockmann JP, Alonso-Ortiz E, Cohen-Adad J
Magn Reson Med (2022) Link to paper (Labels: mri-physics, shimming)
Brain-spinal cord interaction in long-term motor sequence learning in human: An fMRI study
Khatibi A, Vahdat S, Lungu O, Finsterbusch J, Büchel C, Cohen-Adad J, Marchand-Pauvert V, Doyon J
Neuroimage (2022) Link to paper (Labels: neuroscience, fmri, image-analysis)
Advanced Diffusion MR Imaging for Multiple Sclerosis in the Brain and Spinal Cord
Hori M, Maekawa T, Kamiya K, Hagiwara A, Goto M, Takemura MY, Fujita S, Andica C, Kamagata K, Cohen-Adad J, Aoki S
Magn Reson Med Sci (2022) Link to paper (Labels: multiple-sclerosis, quantitative-mri)
Diffusion kurtosis imaging of neonatal spinal cord in clinical routine
Trò R, Roascio M, Tortora D, Severino M, Rossi A, Cohen-Adad J, Fato MM, Arnulfo G
Front Neurol (2022) Link to paper (Labels: quantitative-mri)
The myelin-weighted connectome in Parkinson’s disease
Boshkovski T, Cohen-Adad J, Misic B, Aranult I, Corvol J-C, Vidailhet M, Lehéricy S, Mancini M, Stikov N
Mov Disord (2022) Link to paper (Labels: quantitative-mri, image-analysis)
Quantitative electrophysiological assessments as predictive markers of lower limb motor recovery after spinal cord injury: a pilot study with an adaptive trial design
Huang YN, Meftah EM, Pion CH, Mac-Thiong JM, Cohen-Adad J, Barthélemy D
Spinal Cord Ser Cases (2022) Link to paper (Labels: spinal-cord-injury)
Relationship Between Arterial Stiffness Index, Pulse Pressure, and Magnetic Resonance Imaging Markers of White Matter Integrity: A UK Biobank Study
Badji A, Cohen-Adad J, Girouard H
Front Aging Neurosci (2022) Link to paper (Labels: quantitative-mri, image-analysis)
Segmentation of Multiple Sclerosis Lesions across Hospitals: Learn Continually or Train from Scratch?
Karthik EN, Kerbrat A, Labauge P, Granberg T, Talbott J, Reich DS, Filippi M, Bakshi R, Callot V, Chandar S, Cohen-Adad J
Medical Imaging Meets NeurIPS (MedNeurIPS) Workshop (2022) Link to paper (Labels: image-analysis, deep-learning)
Label fusion and training methods for reliable representation of inter-rater uncertainty
Lemay A, Gros C, Karthik EN, Cohen-Adad J
Machine Learning for Biomedical Imaging (2022) Link to paper (Labels: deep-learning, image-analysis)
Reproducibility and Evolution of Diffusion MRI Measurements within the Cervical Spinal Cord in Multiple Sclerosis
Snoussi H, Caruyer E, Combes B, Commowick O, Bannier E, Kerbrat A, Cohen-Adad J
IEEE International Symposium on Biomedical Imaging (ISBI) 2022, Kolkata, India (2022) Link to paper (Labels: quantitative-mri, image-analysis)
Intervertebral Disc Labeling with Learning Shape Information, a Look once Approach
Azad R, Heidari M, Cohen-Adad J, Adeli E, Merhof D
Predictive Intelligence in Medicine: 5th International Workshop, PRIME 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings (2022) Link to paper (Labels: image-analysis, deep-learning)
2021#
Automatic multiclass intramedullary spinal cord tumor segmentation on MRI with deep learning
Lemay A, Gros C, Zhuo Z, Zhang J, Duan Y, Cohen-Adad J, Liu Y
Neuroimage Clin (2021) Link to paper (Labels: deep-learning, image-analysis)
Spatial correspondence of spinal cord white matter tracts using diffusion tensor imaging, fibre tractography, and atlas-based segmentation
McLachlin S, Leung J, Sivan V, Quirion P-O, Wilkie P, Cohen-Adad J, Whyne C M, Hardisty M R
Neuroradiology (2021) Link to paper (Labels: quantitative-mri, image-analysis)
Spinal Cord Morphology in Degenerative Myelopathy Patients; Assessing Key Morphological Characteristics Using Machine Vision Tools
Ost K, Jacobs WB, Evaniew N, Cohen-Adad J, Anderson D, Cadotte D
Journal of Clinical Medicine (2021) Link to paper (Labels: spinal-cord-injury, quantitative-mri, image-analysis)
Associations between relative morning blood pressure, cerebral blood flow, and memory in older adults treated and controlled for hypertension
Noriega de la Colina A, Badji A, Robitaille-Grou MC, Gagnon C, Boshkovski T, Lamarre-Cliche M, Joubert S, Gauthier C, Bherer L, Cohen-Adad J, Girouard H
Hypertension (2021) Link to paper (Labels: neuroscience)
SoftSeg: Advantages of soft versus binary training for image segmentation
Gros C, Lemay A, Cohen-Adad J
Med Image Anal (2021) Link to paper (Labels: deep-learning, image-analysis)
Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers
Cohen-Adad J, Alonso-Ortiz E, Abramovic M, Arneitz C, Atcheson N, Barlow L, Barry RL, Barth M, Battiston M, Büchel C, Budde M, Callot V, Combes AJE, De Leener B, Descoteaux M, de Sousa PL, Dostál M, Doyon J, Dvorak A, Eippert F, Epperson KR, Epperson KS, Freund P, Finsterbusch J, Foias A, Fratini M, Fukunaga I, Gandini Wheeler-Kingshott CAM, Germani G, Gilbert G, Giove F, Gros C, Grussu F, Hagiwara A, Henry P-G, Horák T, Hori M, Joers J, Kamiya K, Karbasforoushan H, Keřkovský M, Khatibi A, Kim J-W, Kinany N, Kitzler HH, Kolind S, Kong Y, Kudlička P, Kuntke P, Kurniawan ND, Kusmia S, Labounek R, Laganà MM, Laule C, Law CS, Lenglet C, Leutritz T, Liu Y, Llufriu S, Mackey S, Martinez-Heras E, Mattera L, Nestrasil I, O’Grady KP, Papinutto N, Papp D, Pareto D, Parrish TB, Pichiecchio A, Prados F, Rovira À, Ruitenberg MJ, Samson RS, Savini G, Seif M, Seifert AC, Smith AK, Smith SA, Smith ZA, Solana E, Suzuki Y, Tackley G, Tinnermann A, Valošek J, Van De Ville D, Yiannakas MC, Weber KA Ii, Weiskopf N, Wise RG, Wyss PO, Xu J
Sci Data (2021) Link to paper (Labels: quantitative-mri, image-analysis)
Atlas-based Quantification of DTI measures in Typically Developing Pediatric Spinal Cord
Shahrampour S, Flanders A, Faro S, Cohen-Adad J, De-leener B, Middleton D, Krisa L, Alizadeh M, Mohamed F
AJNR (2021) Link to paper (Labels: quantitative-mri, image-analysis)
Quantitative magnetic resonance imaging of spinal cord microstructure in adults with cerebral palsy
Cohen-Adad J
Dev Med Child Neurol (2021) Link to paper (Labels: quantitative-mri)
ivadomed: A Medical Imaging Deep Learning Toolbox
Gros C, Lemay A, Vincent O, Rouhier L, Bourget M-H, Bucquet A, Cohen J, Cohen-Adad J
J Open Source Softw (2021) Link to paper (Labels: deep-learning, image-analysis)
A simple and robust method for automating analysis of naïve and regenerating peripheral nerves
Wong A, Hricz N, Malapati H, von Guionneau N, Wong MJ, Harris T, Boudreau M, Cohen-Adad J
PLoS ONE (2021) Link to paper (Labels: microscopy, image-analysis, deep-learning)
Tracking White and Gray Matter Degeneration along the Spinal Cord Axis in Degenerative Cervical Myelopathy
Vallotton K, David G, Hupp M, Pfender N, Cohen-Adad J, Fehlings MG, Samson RS, Wheeler-Kingshott CAMG, Curt A, Freund P, Seif M
J Neurotrauma (2021) Link to paper (Labels: spinal-cord-injury, quantitative-mri, image-analysis)
Diffusion MRI reveals tract-specific microstructural correlates of electrophysiological impairments in non-myelopathic and myelopathic spinal cord compression
Valošek J, Labounek R, Horák T, Horáková M, Bednařík P, Keřkovský M, Kočica J, Rohan T, Lenglet C, Cohen-Adad J, Hluštík P, Vlčková E, Kadaňka Z, Bednařík J, Svatkova A
Eur J Neurol (2021) Link to paper (Labels: spinal-cord-injury, quantitative-mri, image-analysis)
Rapid simultaneous acquisition of macromolecular tissue volume, susceptibility, and relaxometry maps
Yu FF, Huang SY, Kumar A, Witzel T, Liao C, Duval T, Cohen-Adad J, Bilgic B
Magn Reson Med (2021) Link to paper (Labels: quantitative-mri)
Generic acquisition protocol for quantitative MRI of the spinal cord
Cohen-Adad J, Alonso-Ortiz E, Abramovic M, Arneitz C, Atcheson N, Barlow L, Barry RL, Barth M, Battiston M, Büchel C, Budde M, Callot V, Combes AJE, De Leener B, Descoteaux M, de Sousa PL, Dostál M, Doyon J, Dvorak A, Eippert F, Epperson KR, Epperson KS, Freund P, Finsterbusch J, Foias A, Fratini M, Fukunaga I, Wheeler-Kingshott CAMG, Germani G, Gilbert G, Giove F, Gros C, Grussu F, Hagiwara A, Henry P-G, Horák T, Hori M, Joers J, Kamiya K, Karbasforoushan H, Keřkovský M, Khatibi A, Kim J-W, Kinany N, Kitzler H, Kolind S, Kong Y, Kudlička P, Kuntke P, Kurniawan ND, Kusmia S, Labounek R, Laganà MM, Laule C, Law CS, Lenglet C, Leutritz T, Liu Y, Llufriu S, Mackey S, Martinez-Heras E, Mattera L, Nestrasil I, O’Grady KP, Papinutto N, Papp D, Pareto D, Parrish TB, Pichiecchio A, Prados F, Rovira À, Ruitenberg MJ, Samson RS, Savini G, Seif M, Seifert AC, Smith AK, Smith SA, Smith ZA, Solana E, Suzuki Y, Tackley G, Tinnermann A, Valošek J, Van De Ville D, Yiannakas MC, Weber KA 2nd, Weiskopf N, Wise RG, Wyss PO, Xu J
Nat Protoc (2021) Link to paper (Labels: quantitative-mri)
The R1-weighted connectome: complementing brain networks with a myelin-sensitive measure
Boshkovski T, Kocarev L, Cohen-Adad J, Mišić B, Lehéricy S, Stikov N, Mancini M
Netw Neurosci (2021) Link to paper (Labels: quantitative-mri, image-analysis)
Reduced Axon Calibre in the Associative Striatum of the Sapap3 Knockout Mouse
Lousada E, Boudreau M, Cohen-Adad J, Oumesmar BN, Burguiere E, Schreiweis C
Brain Sci (2021) Link to paper (Labels: microscopy)
Stacked Hourglass Network with a Multi-level Attention Mechanism: Where to Look for Intervertebral Disc Labeling
Azad R, Rouhier L, Cohen-Adad J
Machine Learning in Medical Imaging (MLMI 2021) (2021) Link to paper (Labels: image-analysis, deep-learning)
Benefits of Linear Conditioning with Metadata for Image Segmentation
Lemay A, Gros C, Vincent O, Liu Y, Cohen JP, Cohen-Adad J
MIDL - Medical Imaging with Deep Learning (2021) Link to paper (Labels: image-analysis, deep-learning)
Quantitative 7-Tesla imaging of cortical myelin changes in early multiple sclerosis
Barletta V, Herranz E, Treaba CA, Mehndiratta A, Ouellette R, Mangeat G, Granberg T, Sloane JA, Klawiter EC, Cohen-Adad J, Mainero C
Front Neurol (2021) Link to paper (Labels: quantitative-mri, multiple-sclerosis)
2020#
An interactive meta-analysis of MRI biomarkers of myelin
Mancini M, Karakuzu A, Cohen-Adad J, Cercignani M, Nichols T, Stikov N
eLife (2020) Link to paper (Labels: quantitative-mri)
Validation of Rapid Magnetic Resonance Myelin Imaging in Multiple Sclerosis
Ouellette R, Mangeat G, Polyak I, Warntjes M, Forslin Y, Bergendal Å, Plattén M, Uppman M, Treaba CA, Cohen-Adad J, Piehl F, Wiberg MK, Fredrikson S, Mainero C, Granberg T
Ann Neurol (2020) Link to paper (Labels: multiple-sclerosis, quantitative-mri)
Multi-parametric quantitative in vivo spinal cord MRI with unified signal readout and image denoising
Grussu F, Battiston M, Veraart J, Schneider T, Cohen-Adad J, Shepherd TM, Alexander DC, Fieremans E, Novikov DS, Gandini Wheeler-Kingshott CAM
Neuroimage (2020) Link to paper (Labels: quantitative-mri)
Imaging mechanisms of disease progression in multiple sclerosis: beyond brain atrophy
Bagnato F, Gauthier SA, Laule C, Moore GRW, Bove R, Cai Z, Cohen-Adad J, Harrison DM, Klawiter EC, Morrow SA, Öz G, Rooney WD, Smith SA, Calabresi PA, Henry RG, Oh J, Ontaneda D, Pelletier D, Reich DS, Shinohara RT, Sicotte NL; NAIMS Cooperative
J Neuroimaging (2020) Link to paper (Labels: quantitative-mri, multiple-sclerosis)
Machine learning and multi-parametric brain MRI to differentiate hereditary diffuse leukodystrophy with spheroids from multiple sclerosis
Mangeat G, Ouellette R, Wabartha M, De Leener B, Plattén M, Danylaité Karrenbauer V, Warntjes M, Stikov N, Mainero C, Cohen-Adad J, Granberg T
J Neuroimaging (2020) Link to paper (Labels: multiple-sclerosis, deep-learning, quantitative-mri, image-analysis)
Multiple sclerosis lesions in motor tracts from the brain to the cervical cord: spatial distribution and correlation with disability
Kerbrat A, Gros C, Badji A, Bannier E, Galassi F, Combès B, Chouteau R, Labauge P, Ayrignac X, Carra Dallière C, Maranzano J, Zhuoquiong R, Granberg T, Ouellette R, Stawiarz L, Hillert J, Talbott J, Tachibana Y, Hori M, Kamiya K, Chougar L, Lefeuvre J, Reich DS, Nair G, Valsasina P, Rocca MA, Filippi M, Chu R, Bakshi R, Callot V, Pelletier J, Audoin B, Maarouf A, Collongues N, De Seze J, Edan G, Cohen-Adad J
Brain (2020) Link to paper (Labels: multiple-sclerosis, image-analysis)
7 T imaging reveals a gradient in spinal cord lesion distribution in multiple sclerosis
Ouellette R, Treaba CA, Granberg T, Herranz E, Barletta V, Mehndiratta A, De Leener B, Tauhid S, Yousuf F, Dupont SM, Klawiter EC, Sloane JA, Bakshi R, Cohen-Adad J, Mainero C
Brain (2020) Link to paper (Labels: multiple-sclerosis, quantitative-mri)
Deep Semantic Segmentation of Natural and Medical Images: A Review
Taghanaki SA, Abhishek K, Cohen JP, Cohen-Adad J, Hamarneh G
Artificial Intelligence Review (2020) Link to paper (Labels: deep-learning, image-analysis)
qMRLab: Quantitative MRI analysis, under one umbrella
Karakuzu A, Boudreau M, Duval T, Boshkovski T, Leppert IL, Cabana J-F, Gagnon I, Beliveau P, Pike GB, Cohen-Adad J, Stikov N
Journal of Open Source Software (2020) Link to paper (Labels: quantitative-mri, image-analysis)
Cortico-spinal imaging to study pain
Tinnermann A, Büchel C, Cohen-Adad J
NeuroImage (2020) Link to paper (Labels: neuroscience)
Resting-state brain and spinal cord networks in humans are functionally integrated
Vahdat S, Khatibi A, Lungu O, Finsterbusch J, Büchel C, Cohen-Adad J, Marchand-Pauvert V, Doyon J
PLoS Biol (2020) Link to paper (Labels: neuroscience, fmri)
HARDI-ZOOMit protocol improves specificity to microstructural changes in presymptomatic myelopathy
Labounek R, Valošek J, Horák T, Svátková A, Bednařík P, Vojtíšek L, Horáková M, Nestrašil I, Lenglet C, Cohen-Adad J, Bednařík J, Hluštík P
Sci Rep (2020) Link to paper (Labels: quantitative-mri)
Injury Volume Extracted from MRI Predicts Neurologic Outcome in Acute Spinal Cord Injury: A Prospective TRACK-SCI Pilot Study
Mummaneni N, Burke JF, DiGiorgio AM, Thomas LH, Duong-Fernandez X, Harris M, Pascual LU, Ferguson AR, Russell Huie J, Pan JZ, Hemmerle DD, Singh V, Torres-Espin A, Omondi C, Kyritsis N, Weinstein PR, Whetstone WD, Manley GT, Bresnahan JC, Beattie MS, Cohen-Adad J, Dhall SS, Talbott JF
J Clin Neurosci (2020) Link to paper (Labels: spinal-cord-injury, quantitative-mri)
2019#
Gray Matter Alterations in Early and Late Relapsing-Remitting Multiple Sclerosis Evaluated with Synthetic Quantitative Magnetic Resonance Imaging
Andica C, Hagiwara A, Kamagata K, Yokoyama K, Shimoji K, Saito A, Takenaka Y, Nakazawa M, Hori M, Cohen-Adad J, Takemura MY, Hattori N, Aoki S
Sci Rep (2019) Link to paper (Labels: multiple-sclerosis, quantitative-mri)
The spinal and cerebral profile of adult spinal-muscular atrophy: A multimodal imaging study
Querin G, El Mendili MM, Lenglet T, Behin A, Stojkovic T, Salachas F, Devos D, Le Forestier N, Del Mar Amador M, Debs R, Lacomblez L, Meninger V, Bruneteau G, Cohen-Adad J, Lehéricy S, Laforêt P, Blancho S, Benali H, Catala M, Li M, Marchand-Pauvert V, Hogrel JY, Bede P, Pradat PF
Neuroimage Clin (2019) Link to paper (Labels: neuroscience, image-analysis)
Linearity, Bias, Intrascanner Repeatability, and Interscanner Reproducibility of Quantitative Multidynamic Multiecho Sequence for Rapid Simultaneous Relaxometry at 3 T: A Validation Study With a Standardized Phantom and Healthy Controls
Hagiwara A, Hori M, Cohen-Adad J, Nakazawa M, Suzuki Y, Kasahara A, Horita M, Haruyama T, Andica C, Maekawa T, Kamagata K, Kumamaru KK, Abe O, Aoki S
Invest Radiol (2019) Link to paper (Labels: quantitative-mri, image-analysis)
Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks
Gros C, De Leener B, Badji A, Maranzano J, Eden D, Dupont SM, Talbott J, Zhuoquiong R, Liu Y, Granberg T, Ouellette R, Tachibana Y, Hori M, Kamiya K, Chougar L, Stawiarz L, Hillert J, Bannier E, Kerbrat A, Edan G, Labauge P, Callot V, Pelletier J, Audoin B, Rasoanandrianina H, Brisset JC, Valsasina P, Rocca MA, Filippi M, Bakshi R, Tauhid S, Prados F, Yiannakas M, Kearney H, Ciccarelli O, Smith S, Treaba CA, Mainero C, Lefeuvre J, Reich DS, Nair G, Auclair V, McLaren DG, Martin AR, Fehlings MG, Vahdat S, Khatibi A, Doyon J, Shepherd T, Charlson E, Narayanan S, Cohen-Adad J
Neuroimage (2019) Link to paper (Labels: deep-learning, image-analysis, multiple-sclerosis)
Axons morphometry in the human spinal cord
Duval T, Saliani A, Nami H, Nanci A, Stikov N, Leblond H, Cohen-Adad J
Neuroimage (2019) Link to paper (Labels: microscopy)
Spatial distribution of multiple sclerosis lesions in the cervical spinal cord
Eden D, Gros C, Badji A, Dupont SM, De Leener B, Maranzano J, Zhuoquiong R, Liu Y, Granberg T, Ouellette R, Stawiarz L, Hillert J, Talbott J, Bannier E, Kerbrat A, Edan G, Labauge P, Callot V, Pelletier J, Audoin B, Rasoanandrianina H, Brisset JC, Valsasina P, Rocca MA, Filippi M, Bakshi R, Tauhid S, Prados F, Yiannakas M, Kearney H, Ciccarelli O, Smith S, Treaba CA, Mainero C, Lefeuvre J, Reich DS, Nair G, Shepherd T, Charlson E, Tachibana Y, Hori M, Kamiya K, Chougar L, Narayanan S, Cohen-Adad J
Brain (2019) Link to paper (Labels: quantitative-mri, image-analysis, multiple-sclerosis)
Arterial stiffness and white matter integrity in the elderly: A diffusion tensor and magnetization transfer imaging study
Badji A, Noriega de la Colina A, Karakuzu A, Duval T, Desjardins-Crepeau L, Joubert S, Bherer L, Lamarre-Cliche M, Stikov N, Girouard H, Cohen-Adad J
Neuroimage (2019) Link to paper (Labels: neuroscience, quantitative-mri)
Unsupervised domain adaptation for medical imaging segmentation with self-ensembling
Perone CS, Ballester P, Barros RC, Cohen-Adad J
Neuroimage (2019) Link to paper (Labels: deep-learning, image-analysis)
Promises and limitations of deep learning for medical image segmentation
Perone CS, Cohen-Adad J
Journal of Medical Artificial Intelligence (2019) Link to paper (Labels: deep-learning, image-analysis)
Convolutional Neural Network-Based Automated Segmentation of the Spinal Cord and Contusion Injury: Deep Learning Biomarker Correlates of Motor Impairment in Acute Spinal Cord Injury
McCoy DB, Dupont SM, Gros C, Cohen-Adad J, Huie RJ, Ferguson A, Duong-Fernandez X, Thomas LH, Singh V, Narvid J, Pascual L, Kyritsis N, Beattie MS, Bresnahan JC, Dhall S, Whetstone W, Talbott JF, Investigators T-S
AJNR Am J Neuroradiol (2019) Link to paper (Labels: deep-learning, image-analysis, spinal-cord-injury)
Signal Intensity within Cerebral Venous Sinuses on Synthetic MRI
Chougar L, Hagiwara A, Takano N, Andica C, Cohen-Adad J, Warntjes M, Maekawa T, Hori M, Koshino S, Nakazawa M, Abe O, Aoki S
Magn Reson Med Sci (2019) Link to paper (Labels: image-analysis, mri-physics, quantitative-mri)
Open-source pipeline for multi-class segmentation of the spinal cord with deep learning
Paugam F, Lefeuvre J, Perone CS, Gros C, Reich DS, Sati P, Cohen-Adad J
Magn Reson Imaging (2019) Link to paper (Labels: deep-learning, image-analysis)
Guidelines for the conduct of clinical trials in spinal cord injury: Neuroimaging biomarkers
Seif M, Gandini Wheeler-Kingshott CA, Cohen-Adad J, Flanders AE, Freund P
Spinal Cord (2019) Link to paper (Labels: spinal-cord-injury, image-analysis)
Arterial stiffness and brain integrity: A review of MRI findings
Badji A, Sabra D, Bherer L, Cohen-Adad J, Girouard H, Gauthier C
Ageing Res Rev (2019) Link to paper (Labels: neuroscience, quantitative-mri)
Presymptomatic spinal cord pathology in c9orf72 mutation carriers: A longitudinal neuroimaging study
Querin G, Bede P, El Mendili MM, Li M, Pélégrini-Issac M, Rinaldi D, Catala M, Saracino D, Salachas F, Camuzat A, Marchand-Pauvert V, Cohen-Adad J, Colliot O, Le Ber I, Pradat P-F
Ann Neurol (2019) Link to paper (Labels: neuroscience, image-analysis)
Fixed-Point U-Net Quantization for Medical Image Segmentation
Hemmat M, Honari S, Rouhier L, Perone CS, Cohen-Adad J, Savaria Y, David J-P
MICCAI Workshop on Hardware Aware Learning for Medical Imaging and Computer Assisted Intervention (2019) Link to paper (Labels: image-analysis)
Brainstem and spinal cord MRI identifies altered sensorimotor pathways post-stroke
Karbasforoushan H, Cohen-Adad J, Dewald JPA
Nat Commun (2019) Link to paper (Labels: quantitative-mri, neuroscience)
Geometric evaluation of distortion correction methods in diffusion MRI of the spinal cord
Snoussi H, Caruyer E, Cohen-Adad J, Commowick O, Combès B, Bannier E, Anne K, Barillot C
IEEE International Symposium on Biomedical Imaging (ISBI) (2019) Link to paper (Labels: quantitative-mri, image-analysis)
Arterial stiffness cut-off value and white matter integrity in the elderly
Badji A, Noriega de la Colina A, Karakuzu A, Duval T, Desjardins-Crépeau L, Parizet M, Joubert S, Bherer L, Lamarre-Cliche M, Stikov N, Cohen-Adad J, Girouard H
Neuroimage Clin (2019) Link to paper (Labels: neuroscience, quantitative-mri)
Construction of a rat spinal cord atlas of axon morphometry
Saliani A, Zaimi A, Nami H, Duval T, Stikov N, Cohen-Adad J
Neuroimage (2019) Link to paper (Labels: microscopy, image-analysis)
Traumatic and nontraumatic spinal cord injury: pathological insights from neuroimaging
Gergely D, Mohammadi S, Martin A, Cohen-Adad J, Weiskopf N, Thompson A, Freund P
Nat Rev Neurol (2019) Link to paper (Labels: spinal-cord-injury, image-analysis)
Profiles of cortical inflammation in multiple sclerosis by 11C-PBR28 MR-PET and 7 Tesla imaging
Herranz E, Louapre C, Treaba CA, Govindarajan ST, Ouellette R, Mangeat G, Loggia ML, Cohen-Adad J, Klawiter EC, Sloane JA, Mainero C
Mult Scler (2019) Link to paper (Labels: multiple-sclerosis, neuroscience, quantitative-mri)
2018#
Microstructural imaging in the spinal cord and validation strategies
Cohen-Adad J
Neuroimage (2018) Link to paper (Labels: quantitative-mri, microscopy)
A pneumatic phantom for mimicking respiration-induced artifacts in spinal MRI
De Tillieux P, Topfer R, Foias A, Leroux I, El Maachi I, Leblond H, Stikov N, Cohen-Adad J
Magn Reson Med (2018) Link to paper (Labels: mri-physics, shimming)
PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space
De Leener B, Fonov VS, Collins DL, Callot V, Stikov N, Cohen-Adad J
Neuroimage (2018) Link to paper (Labels: image-analysis)
Spinal Cord Gray Matter Atrophy in Amyotrophic Lateral Sclerosis
Paquin ME, El Mendili MM, Gros C, Dupont SM, Cohen-Adad J, Pradat PF
AJNR Am J Neuroradiol (2018) Link to paper (Labels: image-analysis, neuroscience)
Scan-rescan of axcaliber, macromolecular tissue volume, and g-ratio in the spinal cord
Duval T, Smith V, Stikov N, Klawiter EC, Cohen-Adad J
Magn Reson Med (2018) Link to paper (Labels: quantitative-mri)
Automatic spinal cord localization, robust to MRI contrasts using global curve optimization
Gros C, De Leener B, Dupont SM, Martin AR, Fehlings MG, Bakshi R, Tummala S, Auclair V, McLaren DG, Callot V, Cohen-Adad J, Sdika M
Med Image Anal (2018) Link to paper (Labels: image-analysis)
Test-retest reliability of myelin imaging in the human spinal cord: Measurement errors versus region- and aging-induced variations
Levy S, Guertin MC, Khatibi A, Mezer A, Martinu K, Chen JI, Stikov N, Rainville P, Cohen-Adad J
PLoS ONE (2018) Link to paper (Labels: quantitative-mri)
Design and construction of an optimized transmit/receive hybrid birdcage resonator to improve full body images of medium-sized animals in 7T scanner
Lopez Rios N, Pouliot P, Papoutsis K, Foias A, Stikov N, Lesage F, Dehaes M, Cohen-Adad J
PLoS ONE (2018) Link to paper (Labels: mri-physics)
Real-time correction of respiration-induced distortions in the human spinal cord using a 24-channel shim array
Topfer R, Foias A, Stikov N, Cohen-Adad J
Magn Reson Med (2018) Link to paper (Labels: mri-physics, shimming)
Neuroinflammation of the spinal cord and nerve roots in chronic radicular pain patients
Albrecht DS, Ahmed SU, Kettner NW, Borra RJH, Cohen-Adad J, Deng H, Houle TT, Opalacz A, Roth SA, Melo MFV, Chen L, Mao J, Hooker JM, Loggia ML, Zhang Y
Pain (2018) Link to paper (Labels: spinal-cord-injury, neuroscience)
Changes in structural network are associated with cortical demyelination in early multiple sclerosis
Mangeat G, Badji A, Ouellette R, Treaba CA, Herranz E, Granberg T, Louapre C, Stikov N, Sloane JA, Bellec P, Mainero C, Cohen-Adad J
Hum Brain Mapp (2018) Link to paper (Labels: quantitative-mri, image-analysis, multiple-sclerosis)
AxonDeepSeg: automatic axon and myelin segmentation from microscopy data using convolutional neural networks
Zaimi A, Wabartha M, Herman V, Antonsanti P-L, Perone CS, Cohen-Adad J
Sci Rep (2018) Link to paper (Labels: microscopy, deep-learning, image-analysis)
Promise and pitfalls of g-ratio estimation with MRI
Campbell JSW, Leppert IR, Narayanan S, Boudreau M, Duval T, Cohen-Adad J, Pike GB, Stikov N
Neuroimage (2018) Link to paper (Labels: quantitative-mri)
Effect of cardiac-related translational motion in diffusion MRI of the spinal cord
Morozov D, Lopez Rios N, Duval T, Foias A, Cohen-Adad J
Magn Reson Imaging (2018) Link to paper (Labels: mri-physics)
Can microstructural MRI detect subclinical tissue injury in subjects with asymptomatic cervical spinal cord compression? A prospective cohort study
Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Nouri A, Wilson JR, Tetreault L, Crawley AP, Mikulis DJ, Ginsberg H, Fehlings MG
BMJ Open (2018) Link to paper (Labels: quantitative-mri, spinal-cord-injury)
Monitoring for myelopathic progression with multiparametric quantitative MRI
Martin AR, De Leener B, Cohen-Adad J, Kalsi-Ryan S, Cadotte DW, Wilson JR, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Massicotte EM, Fehlings MG
PLoS ONE (2018) Link to paper (Labels: quantitative-mri, spinal-cord-injury)
Postmortem diffusion MRI of the entire human spinal cord at microscopic resolution
Calabrese E, Adil SM, Cofer G, Perone CS, Cohen-Adad J, Lad SP, Johnson GA
Neuroimage Clin (2018) Link to paper (Labels: quantitative-mri, image-analysis)
Size-adaptable 13-channel receive array for brain MRI in human neonates at 3 T
Lopez Rios N, Foias A, Lodygensky G, Dehaes M, Cohen-Adad J
NMR Biomed (2018) Link to paper (Labels: mri-physics)
What Has Been Learned from Magnetic Resonance Imaging Examination of the Injured Human Spinal Cord: A Canadian Perspective
Cadotte DW, Akbar MA, Fehlings MG, Stroman PW, Cohen-Adad J
J Neurotrauma (2018) Link to paper (Labels: spinal-cord-injury, quantitative-mri)
Inter-Vendor Reproducibility of Myelin Water Imaging Using a 3D Gradient and Spin Echo Sequence
Lee L, Ljungberg E, Shin D, Figley C, Vavasour I, Rauscher A, Cohen-Adad J, Li D, Traboulsee A, MacKay A, Lee J, Kolind S
Front Neurosci (2018) Link to paper (Labels: quantitative-mri, image-analysis)
Spinal cord gray matter segmentation using deep dilated convolutions
Perone CS, Calabrese E, Cohen-Adad J
Sci Rep (2018) Link to paper (Labels: deep-learning, image-analysis)
Deep semi-supervised segmentation with weight-averaged consistency targets
Perone CS, Cohen-Adad J
4th Deep Learning in Medical Image Analysis (DLMIA) Workshop, Granada, Spain (2018) Link to paper (Labels: image-analysis, deep-learning)
2017#
Spinal cord grey matter segmentation challenge
Prados F, Ashburner J, Blaiotta C, Brosch T, Carballido-Gamio J, Cardoso MJ, Conrad BN, Datta E, Dávid G, De Leener B, Dupont SM, Freund P, Wheeler-Kingshott CAMG, Grussu F, Henry R, Landman BA, Ljungberg E, Lyttle B, Ourselin S, Papinutto N, Saporito S, Schlaeger R, Smith SA, Summers P, Tam R, Yiannakas MC, Zhu A, Cohen-Adad J
Neuroimage (2017) Link to paper (Labels: image-analysis)
Fully-integrated framework for the segmentation and registration of the spinal cord white and gray matter
Dupont SM, De Leener B, Taso M, Le Troter A, Nadeau S, Stikov N, Callot V, Cohen-Adad J
Neuroimage (2017) Link to paper (Labels: image-analysis)
g-Ratio weighted imaging of the human spinal cord in vivo
Duval T, Lévy S, Stikov N, Campbell J, Mezer A, Witzel T, Keil B, Smith V, Wald LL, Klawiter E, Cohen-Adad J
Neuroimage (2017) Link to paper (Labels: quantitative-mri)
Functional Magnetic Resonance Imaging of the Spinal Cord: Current Status and Future Developments
Cohen-Adad J
Semin Ultrasound CT MR (2017) Link to paper (Labels: fmri)
SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data
De Leener B, Lévy S, Dupont SM, Fonov VS, Stikov N, Louis Collins D, Callot V, Cohen-Adad J
Neuroimage (2017) Link to paper (Labels: image-analysis)
MRI Atlas-Based Measurement of Spinal Cord Injury Predicts Outcome in Acute Flaccid Myelitis
McCoy DB, Talbott JF, Wilson M, Mamlouk M, Cohen-Adad J, Wilson M, Narvid J
AJNR Am J Neuroradiol (2017) Link to paper (Labels: spinal-cord-injury, quantitative-mri, image-analysis)
Clinically Feasible Microstructural MRI to Quantify Cervical Spinal Cord Tissue Injury Using DTI, MT, and T2*-Weighted Imaging: Assessment of Normative Data and Reliability
Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Kalsi-Ryan S, Lange SF, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Fehlings MG
AJNR Am J Neuroradiol (2017) Link to paper (Labels: quantitative-mri, spinal-cord-injury)
A Novel MRI Biomarker of Spinal Cord White Matter Injury: T2*-Weighted White Matter to Gray Matter Signal Intensity Ratio
Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Kalsi-Ryan S, Lange SF, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Fehlings MG
AJNR Am J Neuroradiol (2017) Link to paper (Labels: quantitative-mri, spinal-cord-injury)
Topologically preserving straightening of spinal cord MRI
De Leener B, Mangeat G, Dupont S, Martin AR, Callot V, Stikov N, Fehlings MG, Cohen-Adad J
J Magn Reson Imaging (2017) Link to paper (Labels: image-analysis)
Brain processing of the temporal dimension of acute pain in short-term memory
Khoshnejad M, Roy M, Martinu K, Chen JI, Cohen-Adad J, Grondin S, Rainville P
Pain (2017) Link to paper (Labels: neuroscience)
AxonPacking: An Open-Source Software to Simulate Arrangements of Axons in White Matter
Mingasson T, Duval T, Stikov N, Cohen-Adad J
Front Neuroinform (2017) Link to paper (Labels: microscopy, image-analysis)
Axon and Myelin Morphology in Animal and Human Spinal Cord
Saliani A, Perraud B, Duval T, Stikov N, Rossignol S, Cohen-Adad J
Front Neuroanat (2017) Link to paper (Labels: microscopy)
In vivo characterization of cortical and white matter neuroaxonal pathology in early multiple sclerosis
Granberg T, Fan Q, Treaba CA, Ouellette R, Herranz E, Mangeat G, Louapre C, Cohen-Adad J, Klawiter EC, Sloane JA, Mainero C
Brain (2017) Link to paper (Labels: quantitative-mri, multiple-sclerosis)
2016#
AxonSeg: open source software for axon and myelin segmentation and morphometric analysis
Zaimi A, Duval T, Gasecka A, Côté D, Stikov N, Cohen-Adad J
Front Neuroinform (2016) Link to paper (Labels: microscopy, image-analysis)
Quantitative magnetization transfer imaging made easy with qMTLab: Software for data simulation, analysis, and visualization
Cabana J-F, Gu Y, Boudreau M, Levesque IR, Atchia Y, Sled JG, Narayanan S, Arnold DL, Pike GB, Cohen-Adad J, Duval T, Vuong M-T, Stikov N
Concepts in Magnetic Resonance Part A (2016) Link to paper (Labels: quantitative-mri, image-analysis)
Is the Relationship between Cortical and White Matter Pathologic Changes in Multiple Sclerosis Spatially Specific? A Multimodal 7-T and 3-T MR Imaging Study with Surface and Tract-based Analysis
Louapre C, Govindarajan ST, Gianni C, Cohen-Adad J, Gregory MD, Nielsen AS, Madigan N, Sloane JA, Kinkel RP, Mainero C
Radiology (2016) Link to paper (Labels: quantitative-mri, image-analysis, multiple-sclerosis)
Segmentation of the human spinal cord
De Leener B, Taso M, Cohen-Adad J, Callot V
MAGMA (2016) Link to paper (Labels: image-analysis)
ZOOM or Non-ZOOM? Assessing Spinal Cord Diffusion Tensor Imaging Protocols for Multi-Centre Studies
Samson RS, Levy S, Schneider T, Smith AK, Smith SA, Cohen-Adad J, Gandini Wheeler-Kingshott CA
PLoS ONE (2016) Link to paper (Labels: quantitative-mri, mri-physics)
A 24-channel shim array for the human spinal cord: Design, evaluation, and application
Topfer R, Starewicz P, Lo KM, Metzemaekers K, Jette D, Hetherington HP, Stikov N, Cohen-Adad J
Magn Reson Med (2016) Link to paper (Labels: mri-physics, shimming)
Brainhack: a collaborative workshop for the open neuroscience community
Craddock CR, S Margulies D, Bellec P, Nolan Nichols B, Alcauter S, A Barrios F, Burnod Y, J Cannistraci C, Cohen-Adad J, De Leener B, Dery S, Downar J, Dunlop K, R Franco A, Seligman Froehlich C, J Gerber A, S Ghosh S, J Grabowski T, Hill S, Sólon Heinsfeld A, Matthew Hutchison R, Kundu P, R Laird A, Liew SL, J Lurie D, G McLaren D, Meneguzzi F, Mennes M, Mesmoudi S, O'Connor D, H Pasaye E, Peltier S, Poline JB, Prasad G, Fraga Pereira R, Quirion PO, Rokem A, S Saad Z, Shi Y, C Strother S, Toro R, Q Uddin L, D Van Horn J, W Van Meter J, C Welsh R, Xu T
Gigascience (2016) Link to paper (Labels: neuroscience, image-analysis)
Modeling white matter microstructure
Duval T, Stikov N, Cohen-Adad J
Funct Neurol (2016) Link to paper (Labels: quantitative-mri)
2015#
Spinal diffusion tensor imaging: A comprehensive review with emphasis on spinal cord anatomy and clinical applications
Hendrix P, Griessenauer CJ, Cohen-Adad J, Rajasekaran S, Cauley KA, Shoja MM, Pezeshk P, Shane Tubbs R
Clin Anat (2015) Link to paper (Labels: quantitative-mri)
Characterizing the location of spinal and vertebral levels in the human cervical spinal cord
Cadotte DW, Cadotte A, Cohen-Adad J, Fleet D, Livne M, Wilson JR, Mikulis D, Nugaeva N, Fehlings MG
AJNR Am J Neuroradiol (2015) Link to paper (Labels: neuroscience)
Reproducibility of T2* mapping in the human cerebral cortex in vivo at 7 Tesla MRI
Govindarajan ST, Cohen-Adad J, Sormani MP, Fan AP, Louapre C, Mainero C
J Magn Reson Imaging (2015) Link to paper (Labels: quantitative-mri, neuroscience)
The impact of gradient strength on in vivo diffusion MRI estimates of axon diameter
Huang SY, Nummenmaa A, Witzel T, Duval T, Cohen-Adad J, Wald LL, McNab JA
Neuroimage (2015) Link to paper (Labels: mri-physics, quantitative-mri)
In vivo mapping of human spinal cord microstructure at 300mT/m
Duval T, McNab JA, Setsompop K, Witzel T, Schneider T, Huang SY, Keil B, Klawiter EC, Wald LL, Cohen-Adad J
Neuroimage (2015) Link to paper (Labels: quantitative-mri)
A gradient in cortical pathology in multiple sclerosis by in vivo quantitative 7 T imaging
Mainero C, Louapre C, Govindarajan ST, Gianni C, Nielsen AS, Cohen-Adad J, Sloane J, Kinkel RP
Brain (2015) Link to paper (Labels: multiple-sclerosis, quantitative-mri)
High resolution imaging of the central nervous system: how novel imaging methods combined with navigation strategies will advance patient care
Farooq H, Genis H, Alarcon J, Vuong B, Jivraj J, Yang VXD, Cohen-Adad J, Fehlings MG, Cadotte A
Prog Brain Res (2015) Link to paper (Labels: quantitative-mri, spinal-cord-injury, neuroscience)
Validation of a semiautomated spinal cord segmentation method
El Mendili MM, Chen R, Tiret B, Pelegrini-Issac M, Cohen-Adad J, Lehericy S, Pradat PF, Benali H
J Magn Reson Imaging (2015) Link to paper (Labels: image-analysis)
Simultaneous Brain-Cervical Cord FMRI Reveals Intrinsic Spinal Cord Plasticity during Motor Sequence Learning
Vahdat S, Lungu O, Cohen-Adad J, Marchand-Pauvert V, Benali H, Doyon J
PLoS Biol (2015) Link to paper (Labels: neuroscience, fmri)
A reliable spatially normalized template of the human spinal cord--Applications to automated white matter/gray matter segmentation and tensor-based morphometry (TBM) mapping of gray matter alterations occurring with age
Taso M, Le Troter A, Sdika M, Cohen-Adad J, Arnoux PJ, Guye M, Ranjeva JP, Callot V
Neuroimage (2015) Link to paper (Labels: quantitative-mri, image-analysis)
Automatic segmentation of the spinal cord and spinal canal coupled with vertebral labeling
De Leener B, Cohen-Adad J, Kadoury S
IEEE Trans Med Imaging (2015) Link to paper (Labels: image-analysis)
Multivariate combination of magnetization transfer, T2* and B0 orientation to study the myelo-architecture of the in vivo human cortex
Mangeat G, Govindarajan ST, Mainero C, Cohen-Adad J
Neuroimage (2015) Link to paper (Labels: quantitative-mri, image-analysis)
Quantifying the microvascular origin of BOLD-fMRI from first principles with two-photon microscopy and an oxygen-sensitive nanoprobe
Gagnon L, Sakadzic S, Lesage F, Musacchia JJ, Lefebvre J, Fang Q, Yucel MA, Evans KC, Mandeville ET, Cohen-Adad J, Polimeni JR, Yaseen MA, Lo EH, Greve DN, Buxton RB, Dale AM, Devor A, Boas DA
J Neurosci (2015) Link to paper (Labels: neuroscience, fmri, microscopy)
White matter atlas of the human spinal cord with estimation of partial volume effect
Levy S, Benhamou M, Naaman C, Rainville P, Callot V, Cohen-Adad J
Neuroimage (2015) Link to paper (Labels: quantitative-mri, image-analysis)
Fully automated segmentation of the cervical cord from T1-weighted MRI using PropSeg: Application to multiple sclerosis
Yiannakas MC, Mustafa A, De Leener B, Kearney H, Tur C, Altmann DR, De Angelis F, Plantone D, Ciccarelli O, Miller DH, Cohen-Adad J, Wheeler-Kingshott C
Neuroimage Clin (2015) Link to paper (Labels: image-analysis)
A Temperature Phantom to Probe the Ensemble Average Propagator Asymmetry: an In-Silico Study
Piazzolato M, Wassermann D, Duval T, Campbell JSW, Boutelier T, Cohen-Adad J, Deriche R
Computational Diffusion MRI: MICCAI Workshop, Munich, Germany (2015) Link to paper (Labels: mri-physics, quantitative-mri)
Translating state-of-the-art spinal cord MRI techniques to clinical use: A systematic review of clinical studies utilizing DTI, MT, MWF, MRS, and fMRI
Martin AR, Aleksanderek I, Cohen-Adad J, Tarmohamed Z, Tetreault L, Smith N, Cadotte DW, Crawley AP, Ginsberg H, Mikulis D, Fehlings MG
Neuroimage Clin (2015) Link to paper (Labels: quantitative-mri, image-analysis, spinal-cord-injury, multiple-sclerosis, fmri)
Real diffusion-weighted MRI enabling true signal averaging and increased diffusion contrast
Eichner C, Cauley SF, Cohen-Adad J, Moller HE, Turner R, Setsompop K, Wald LL
Neuroimage (2015) Link to paper (Labels: quantitative-mri, image-analysis)
Spinal Cord Segmentation by One Dimensional Normalized Template Matching: A Novel, Quantitative Technique to Analyze Advanced Magnetic Resonance Imaging Data
Cadotte A, Cadotte DW, Livne M, Cohen-Adad J, Fleet D, Mikulis D, Fehlings MG
PLoS ONE (2015) Link to paper (Labels: quantitative-mri, image-analysis)
In vivo histology of the myelin g-ratio with magnetic resonance imaging
Stikov N, Campbell JS, Stroh T, Lavelee M, Frey S, Novek J, Nuara S, Ho MK, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Duval T, Cohen-Adad J, Picard PA, Gasecka A, Cote D, Pike GB
Neuroimage (2015) Link to paper (Labels: quantitative-mri, neuroscience)
Quantitative analysis of the myelin g-ratio from electron microscopy images of the macaque corpus callosum
Stikov N, Campbell JS, Stroh T, Lavelee M, Frey S, Novek J, Nuara S, Ho MK, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Duval T, Cohen-Adad J, Picard PA, Gasecka A, Cote D, Pike GB
Data Brief (2015) Link to paper (Labels: quantitative-mri, microscopy, neuroscience)
2014#
Multi-parametric spinal cord MRI as potential progression marker in amyotrophic lateral sclerosis
El Mendili MM, Cohen-Adad J, Pelegrini-Issac M, Rossignol S, Morizot-Koutlidis R, Marchand-Pauvert V, Iglesias C, Sangari S, Katz R, Lehericy S, Benali H, Pradat PF
PLoS ONE (2014) Link to paper (Labels: quantitative-mri, neuroscience)
What can we learn from T2* maps of the cortex?
Cohen-Adad J
Neuroimage (2014) Link to paper (Labels: quantitative-mri, neuroscience)
The current state-of-the-art of spinal cord imaging: methods
Stroman PW, Wheeler-Kingshott C, Bacon M, Schwab JM, Bosma R, Brooks J, Cadotte D, Carlstedt T, Ciccarelli O, Cohen-Adad J, Curt A, Evangelou N, Fehlings MG, Filippi M, Kelley BJ, Kollias S, Mackay A, Porro CA, Smith S, Strittmatter SM, Summers P, Tracey I
Neuroimage (2014) Link to paper (Labels: quantitative-mri)
The current state-of-the-art of spinal cord imaging: applications
Wheeler-Kingshott CA, Stroman PW, Schwab JM, Bacon M, Bosma R, Brooks J, Cadotte DW, Carlstedt T, Ciccarelli O, Cohen-Adad J, Curt A, Evangelou N, Fehlings MG, Filippi M, Kelley BJ, Kollias S, Mackay A, Porro CA, Smith S, Strittmatter SM, Summers P, Thompson AJ, Tracey I
Neuroimage (2014) Link to paper (Labels: quantitative-mri, spinal-cord-injury, multiple-sclerosis, neuroscience)
Nineteen-channel receive array and four-channel transmit array coil for cervical spinal cord imaging at 7T
Zhao W, Cohen-Adad J, Polimeni JR, Keil B, Guerin B, Setsompop K, Serano P, Mareyam A, Hoecht P, Wald LL
Magn Reson Med (2014) Link to paper (Labels: mri-physics)
Effect of respiration on the B0 field in the human spinal cord at 3T
Verma T, Cohen-Adad J
Magn Reson Med (2014) Link to paper (Labels: mri-physics, shimming)
Robust, accurate and fast automatic segmentation of the spinal cord
De Leener B, Kadoury S, Cohen-Adad J
Neuroimage (2014) Link to paper (Labels: image-analysis)
Automatic labeling of vertebral levels using a robust template-based approach
Ullmann E, Thong W, Pelletier Paquette JP, Cohen-Adad J
Int J Biomed Imaging (2014) Link to paper (Labels: image-analysis)
Recovery of locomotion after partial spinal cord lesions in cats: assessment using behavioral, electrophysiological and imaging techniques
Cohen-Adad J, Martinez M, Delivet-Mongrain H, Rossignol S
Acta Neurobiol Exp (Wars) (2014) Link to paper (Labels: spinal-cord-injury, neuroscience)
Framework for integrated MRI average of the spinal cord white and gray matter: the MNI-Poly-AMU template
Fonov VS, Le Troter A, Taso M, De Leener B, Leveque G, Benhamou M, Sdika M, Benali H, Pradat PF, Collins DL, Callot V, Cohen-Adad J
Neuroimage (2014) Link to paper (Labels: image-analysis)
Automatic 3D segmentation of spinal cord MRI using propagated deformable models
De Leener B, Cohen-Adad J, Kadoury S
Proceedings of the SPIE (2014) Link to paper (Labels: image-analysis)
2013#
The Human Connectome Project and beyond: initial applications of 300 mT/m gradients
McNab JA, Edlow BL, Witzel T, Huang SY, Bhat H, Heberlein K, Feiweier T, Liu K, Keil B, Cohen-Adad J, Tisdall MD, Folkerth RD, Kinney HC, Wald LL
NeuroImage (2013) Link to paper (Labels: mri-physics, quantitative-mri)
Fast diffusion tensor imaging and tractography of the whole cervical spinal cord using point spread function corrected echo planar imaging
Lundell H, Barthelemy D, Biering-Sorensen F, Cohen-Adad J, Nielsen JB, Dyrby TB
Magn Reson Med (2013) Link to paper (Labels: image-analysis, quantitative-mri)
7-T MRI of the spinal cord can detect lateral corticospinal tract abnormality in amyotrophic lateral sclerosis
Cohen-Adad J, Zhao W, Keil B, Ratai E-M, Triantafyllou C, Lawson R, Dheel C, Wald LL, Rosen BR, Cudkowicz M, Atassi N
Muscle Nerve (2013) Link to paper (Labels: neuroscience, quantitative-mri)
Involvement of spinal sensory pathway in ALS and specificity of cord atrophy to lower motor neuron degeneration
Cohen-Adad J, El Mendili MM, Morizot-Koutlidis R, Lehericy S, Meininger V, Blancho S, Rossignol S, Benali H, Pradat P-F
Amyotroph Lateral Scler Frontotemporal Degener (2013) Link to paper (Labels: quantitative-mri, neuroscience)
Visualizing integrative functioning in the human brainstem and spinal cord with spinal functional magnetic resonance imaging
Cadotte DW, Cohen-Adad J, Fehlings MG
Clinical Neurosurgery (2013) Link to paper (Labels: neuroscience, fmri)
Pushing the limits of in vivo diffusion MRI for the Human Connectome Project
Setsompop K, Kimmlingen R, Eberlein E, Witzel T, Cohen-Adad J, McNab JA, Keil B, Tisdall MD, Hoecht P, Dietz P, Cauley SF, Tountcheva V, Matschl V, Lenz H, Bhat H, Heberlein K, Potthast A, Thein H, Van Horn JD, Toga AW, Schmitt F, Lehne D, Rosen BR, Wedeen VJ, Wald LL
NeuroImage (2013) Link to paper (Labels: mri-physics, quantitative-mri)
Identification of discrete functional subregions of the human periaqueductal gray
Satpute A, Wager T, Cohen-Adad J, Bianciardi M, Choi J-K, Buhle J, Wald LL, Fedman Barret L
Proc Natl Acad Sci U S A (2013) Link to paper (Labels: quantitative-mri, neuroscience)
2012#
Accelerated Diffusion Spectrum Imaging with Compressed Sensing using Adaptive Dictionaries
Bilgic B, Setsompop K, Cohen-Adad J, Wedeen VJ, Wald LL, Adalsteinsson E
Med Image Comput Comput Assist Interv (2012) Link to paper (Labels: mri-physics, image-analysis)
Accelerated diffusion spectrum imaging with compressed sensing using adaptive dictionaries
Bilgic B, Setsompop K, Cohen-Adad J, Yendiki A, Wald LL, Adalsteinsson E
Magn Reson Med (2012) Link to paper (Labels: quantitative-mri, mri-physics, image-analysis)
7T MRI of spinal cord injury
Cohen-Adad J, Zhao W, Wald LL, Oaklander AL
Neurology (2012) Link to paper (Labels: spinal-cord-injury, quantitative-mri)
Cervical spinal cord injection of epidural corticosteroids: comprehensive longitudinal study including multiparametric magnetic resonance imaging
Cohen-Adad J, Buchbinder B, Oaklander AL
Pain (2012) Link to paper (Labels: spinal-cord-injury, quantitative-mri)
Reduction of physiological noise with independent component analysis improves the detection of nociceptive responses with fMRI of the human spinal cord
Xie G, Piche M, Khoshejad M, Perlbarg V, Chen J-I, Hoge RD, Benali H, Rossignol S, Rainville P, Cohen-Adad J
NeuroImage (2012) Link to paper (Labels: fmri, image-analysis)
Improving diffusion MRI using simultaneous multi-slice echo planar imaging
Setsompop K, Cohen-Adad J, Gagoski BA, Raij T, Yendiki A, Keil B, Wedeen VJ, Wald LL
Neuroimage (2012) Link to paper (Labels: mri-physics)
T2* mapping and B0 orientation-dependence at 7T reveal cyto- and myeloarchitecture organization of the human cortex
Cohen-Adad J, Polimeni JR, Helmer KG, Benner T, McNab JA, Wald LL, Rosen B, Mainero C
Neuroimage (2012) Link to paper (Labels: quantitative-mri, neuroscience)
Focal cortical lesion detection in multiple sclerosis: 3 Tesla DIR versus 7 Tesla FLASH-T2
Nielsen AS, Kinkel RP, Tinelli E, Benner T, Cohen-Adad J, Mainero C
J Magn Reson Imaging (2012) Link to paper (Labels: multiple-sclerosis, quantitative-mri)
2011#
Demyelination and degeneration in the injured human spinal cord detected with diffusion and magnetization transfer MRI
Cohen-Adad J, El Mendili M-M, Lehéricy S, Pradat P-F, Blancho S, Rossignol S, Benali H
Neuroimage (2011) Link to paper (Labels: spinal-cord-injury, quantitative-mri)
In vivo evidence of disseminated subpial T2* signal changes in multiple sclerosis at 7 T: a surface-based analysis
Cohen-Adad J, Benner T, Greve DN, Kinkel RP, Radding A, Fischl B, Rosen BR, Mainero C
Neuroimage (2011) Link to paper (Labels: multiple-sclerosis, quantitative-mri)
Quality assessment of high angular resolution diffusion imaging data using bootstrap on Q-ball reconstruction
Cohen-Adad J, Descoteaux M, Wald LL
J Magn Reson Imaging (2011) Link to paper (Labels: quantitative-mri, image-analysis)
32-channel RF coil optimized for brain and cervical spinal cord at 3 T
Cohen-Adad J, Mareyam A, Keil B, Polimeni JR, Wald LL
Magn Reson Med (2011) Link to paper (Labels: mri-physics)
Wallerian degeneration after spinal cord lesions in cats detected with diffusion tensor imaging
Cohen-Adad J, Leblond H, Delivet-Mongrain H, Martinez M, Benali H, Rossignol S
Neuroimage (2011) Link to paper (Labels: spinal-cord-injury, quantitative-mri)
Impact of outliers on diffusion tensor and Q-ball imaging: clinical implications and correction strategies
Sharman M, Cohen-Adad J, Descoteaux M, Messé A, Benali H, Lehericy S
J Magn Reson Imaging (2011) Link to paper (Labels: quantitative-mri, image-analysis)
2010#
Human cervical spinal cord funiculi: investigation with magnetic resonance diffusion tensor imaging
Onu M, Gervai P, Cohen-Adad J, Lawrence J, Kornelsen J, Tomanek B, Sboto-Frankenstein UN
J Magn Reson Imaging (2010) Link to paper (Labels: quantitative-mri, image-analysis, neuroscience)
Characterization of the hemodynamic response in the vivo rat lumbar spinal cord by intrinsic optical imaging and laser speckle microscopy
Brieu N, Beaumont E, Dubeau S, Cohen-Adad J, Lesage F
J Neurosci Methods (2010) Link to paper (Labels: fmri, microscopy, neuroscience)
BOLD signal responses to controlled hypercapnia in human spinal cord
Cohen-Adad J, Gauthier CJ, Brooks JCW, Slessarev M, Han J, Fisher JA, Rossignol S, Hoge RD
Neuroimage (2010) Link to paper (Labels: fmri, neuroscience)
2009#
Characterization of cardiac-related noise in fMRI of the cervical spinal cord
Piché M, Cohen-Adad J, Nejad MK, Perlbarg V, Xie G, Beaudoin G, Benali H, Rainville P
Magn Reson Imaging (2009) Link to paper (Labels: fmri)
Investigations on spinal cord fMRI of cats under ketamine
Cohen-Adad J, Hoge RD, Leblond H, Xie G, Beaudoin G, Song AW, Krueger G, Doyon J, Benali H, Rossignol S
Neuroimage (2009) Link to paper (Labels: fmri, neuroscience)
2008#
Detection of multiple pathways in the spinal cord using q-ball imaging
Cohen-Adad J, Descoteaux M, Rossignol S, Hoge RD, Deriche R, Benali H
Neuroimage (2008) Link to paper (Labels: quantitative-mri)
In vivo DTI of the healthy and injured cat spinal cord at high spatial and angular resolution
Cohen-Adad J, Benali H, Hoge RD, Rossignol S
Neuroimage (2008) Link to paper (Labels: spinal-cord-injury, quantitative-mri)
Development of clinical diffusion tensor MRI of the spinal cord in a context of spinal cord injury
Cohen-Adad J, Benali H, Barrière G, Leblond H, Hoge RD, Rossignol S
IRBM (2008) Link to paper (Labels: spinal-cord-injury, quantitative-mri)
2007#
Application of the general linear model to hemodynamic response estimation in diffuse optical imaging
Chapuisat S, Cohen-Adad J, Grova C, Lina JM, Rossignol S, Doyon J, Benali H, Lesage F
SPIE Photonics North (2007) Link to paper (Labels: fmri, neuroscience)
Activation detection in diffuse optical imaging by means of the general linear model
Cohen-Adad J, Chapuisat S, Doyon J, Rossignol S, Lina JM, Benali H, Lesage F
Med Image Anal (2007) Link to paper (Labels: fmri)
2006#
Knowledge modeling in image guided neurosurgery: application in understanding intra-operative brain shift
Cohen-Adad J, Paul P, Morandi X, Jannin P
SPIE Medical Imaging (2006) Link to paper (Labels: image-analysis, neuroscience)