`📚` Publications#

List of publications on Pubmed.

Journal Articles#

Boshkovski T, Cohen-Adad J, Misic B, Aranult I, Corvol J-C, Vidailhet M, Lehéricy S, Mancini M, Stikov N. The myelin-weighted connectome in Parkinson’s disease. Mov Disord 2021
Lousada E, Boudreau M, Cohen-Adad J, Oumesmar BN, Burguiere E, Schreiweis C. A comprehensive structural characterization of the Sapap3 knockout mouse for repetitive behaviours. Brain Sci 2021
Barletta V, Herranz E, Treaba CA, Mehndiratta A, Ouellette R, Mangeat G, Granberg T, Sloane JA, Klawiter EC, Cohen-Adad J, Mainero C. Quantitative 7-Tesla imaging of cortical myelin changes in early multiple sclerosis. Front Neurol 2021
Boshkovski T, Kocarev L, Cohen-Adad J, Mišić B, Lehéricy S, Stikov N, Mancini M. The R1-weighted connectome: complementing brain networks with a myelin-sensitive measure. Netw Neurosci 2021
Lemay A*, Gros C*, Zhuo Z, Zhang J, Duan Y, Cohen-Adad J, Liu Y. Automatic multiclass intramedullary spinal cord tumor segmentation on MRI with deep learning. Neuroimage Clin 2021
Yu FF, Huang SY, Kumar A, Witzel T, Liao C, Duval T, Cohen-Adad J, Bilgic B. Rapid simultaneous acquisition of macromolecular tissue volume, susceptibility, and relaxometry maps. Magn Reson Med 2021
Valošek J, Labounek R, Horák T, Horáková M, Bednařík P, Keřkovský M, Kočica J, Rohan T, Lenglet C, Cohen-Adad J, Hluštík P, Vlčková E, Kadaňka Z, Bednařík J, Svatkova A. Diffusion MRI reveals tract-specific microstructural correlates of electrophysiological impairments in non-myelopathic and myelopathic spinal cord compression. Eur J Neurol 2021
Vallotton K, David G, Hupp M, Pfender N, Cohen-Adad J, Fehlings MG, Samson RS, Wheeler-Kingshott CAMG, Curt A, Freund P, Seif M. Tracking White and Gray Matter Degeneration along the Spinal Cord Axis in Degenerative Cervical Myelopathy. J Neurotrauma 2021
Wong A, Hricz N, Malapati H, von Guionneau N, Wong MJ, Harris T, Boudreau M, Cohen-Adad J. A simple and robust method for automating analysis of naïve and regenerating peripheral nerves. PLoS ONE 2021
Gros C, Lemay A, Vincent O, Rouhier L, Bourget M-H, Bucquet A, Cohen J, Cohen-Adad J. ivadomed: A Medical Imaging Deep Learning Toolbox. J Open Source Softw 2021
Cohen-Adad J. Quantitative magnetic resonance imaging of spinal cordmicrostructure in adults with cerebral palsy. Dev Med Child Neurol 2021
Shahrampour S, Flanders A, Faro S, Cohen-Adad J, De-leener B, Middleton D, Krisa L, Alizadeh M, Mohamed F. Atlas-based Quantification of DTI measures in Typically Developing Pediatric Spinal Cord. AJNR 2021
Lemay A et al. Benefits of Linear Conditioning with Metadata for Image Segmentation. MIDL 2021.
Cohen-Adad J et al. Generic acquisition protocol for quantitative MRI of the spinal cord. Nat Protocols 2021
Cohen-Adad J et al. Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. Sci Data 2021
Gros C, Lemay A, Cohen-Adad J. SoftSeg: Advantages of soft versus binary training for image segmentation. Med Image Anal 2021
Noriega de la Colina A, Badji A, Robitaille-Grou MC, Gagnon C, Boshkovski T, Lamarre-Cliche M, Joubert S, Gauthier C, Bherer L, Cohen-Adad J, Girouard H. Associations between relative morning blood pressure, cerebral blood flow, and memory in older adults treated and controlled for hypertension. Hypertension 2021
Ost K, Jacobs WB, Evaniew N, Cohen-Adad J, Anderson D, Cadotte D. Spinal Cord Morphology in Degenerative Myelopathy Patients; Assessing Key Morphological Characteristics Using Machine Vision Tools. Journal of Clinical Medicine 2021
Mummaneni N, Burke JF, DiGiorgio AM, Thomas LH, Duong-Fernandez X, Harris M, Pascual LU, Ferguson AR, Russell Huie J, Pan JZ, Hemmerle DD, Singh V, Torres-Espin A, Omondi C, Kyritsis N, Weinstein PR, Whetstone WD, Manley GT, Bresnahan JC, Beattie MS, Cohen-Adad J, Dhall SS, Talbott JF. Injury Volume Extracted from MRI Predicts Neurologic Outcome in Acute Spinal Cord Injury: A Prospective TRACK-SCI Pilot Study. J Clin Neurosci 2020
Labounek R, Valošek J, Horák T, Svátková A, Bednařík P, Vojtíšek L, Horáková M, Nestrašil I, Lenglet C, Cohen-Adad J, Bednařík J, Hluštík P. HARDI-ZOOMit protocol improves specificity to microstructural changes in presymptomatic myelopathy. Sci Rep 2020
Mancini M, Karakuzu A, Cohen-Adad J, Cercignani M, Nichols T, Stikov N. An interactive meta-analysis of MRI biomarkers of myelin. eLife 2020
Tinnermann A, Büchel C, Cohen-Adad J. Cortico-spinal imaging to study pain. NeuroImage 2020
Karakuzu A, Boudreau M, Duval T, Boshkovski T, Leppert IL, Cabana J-F, Gagnon I, Beliveau P, Pike GB, Cohen-Adad J, Stikov N. qMRLab: Quantitative MRI analysis, under one umbrella. Journal of Open Source Software 2020
Vahdat S, Khatibi A, Lungu O, Finsterbusch J, Büchel C, Cohen-Adad J, Marchand-Pauvert V, Doyon J. Resting-state brain and spinal cord networks in humans are functionally integrated. PLoS Biol 2020
Taghanaki SA, Abhishek K, Cohen JP, Cohen-Adad J, Hamarneh G. Deep Semantic Segmentation of Natural and Medical Images: A Review. Artificial Intelligence Review 2020
Ouellette R, Treaba CA, Granberg T, Herranz E, Barletta V, Mehndiratta A, De Leener B, Tauhid S, Yousuf F, Dupont SM, Klawiter EC, Sloane JA, Bakshi R, Cohen-Adad J, Mainero C. 7 T imaging reveals a gradient in spinal cord lesion distribution in multiple sclerosis. Brain 2020
Kerbrat A, Gros C, Badji A, Bannier E, Galassi F, Combès B, Chouteau R, Labauge P, Ayrignac X, Carra Dallière C, Maranzano J, Zhuoquiong R, Granberg T, Ouellette R, Stawiarz L, Hillert J, Talbott J, Tachibana Y, Hori M, Kamiya K, Chougar L, Lefeuvre J, Reich DS, Nair G, Valsasina P, Rocca MA, Filippi M, Chu R, Bakshi R, Callot V, Pelletier J, Audoin B, Maarouf A, Collongues N, De Seze J, Edan G, Cohen-Adad J. Multiple sclerosis lesions in motor tracts from the brain to the cervical cord: spatial distribution and correlation with disability. Brain 2020
Mangeat G, Ouellette R, Wabartha M, De Leener B, Plattén M, Danylaité Karrenbauer V, Warntjes M, Stikov N, Mainero C, Cohen-Adad J, Granberg T. Machine learning and multi-parametric brain MRI to differentiate hereditary diffuse leukodystrophy with spheroids from multiple sclerosis. J Neuroimaging 2020
Bagnato F, Gauthier SA, Laule C, Moore GRW, Bove R, Cai Z, Cohen-Adad J, Harrison DM, Klawiter EC, Morrow SA, Öz G, Rooney WD, Smith SA, Calabresi PA, Henry RG, Oh J, Ontaneda D, Pelletier D, Reich DS, Shinohara RT, Sicotte NL; NAIMS Cooperative. Imaging mechanisms of disease progression in multiple sclerosis: beyond brain atrophy. J Neuroimaging 2020
Grussu F, Battiston M, Veraart J, Schneider T, Cohen-Adad J, Shepherd TM, Alexander DC, Fieremans E, Novikov DS, Gandini Wheeler-Kingshott CAM. Multi-parametric quantitative in vivo spinal cord MRI with unified signal readout and image denoising. Neuroimage 2020
Ouellette R, Mangeat G, Polyak I, Warntjes M, Forslin Y, Bergendal Å, Plattén M, Uppman M, Treaba CA, Cohen-Adad J, Piehl F, Wiberg MK, Fredrikson S, Mainero C, Granberg T. Validation of Rapid Magnetic Resonance Myelin Imaging in Multiple Sclerosis. Ann Neurol 2020
Badji A, Noriega de la Colina A, Karakuzu A, Duval T, Desjardins-Crépeau L, Parizet M, Joubert S, Bherer L, Lamarre-Cliche M, Stikov N, Cohen-Adad J, Girouard H. Arterial stiffness cut-off value and white matter integrity in the elderly. Neuroimage Clin 2019
Saliani A, Zaimi A, Nami H, Duval T, Stikov N, Cohen-Adad J. Construction of a rat spinal cord atlas of axon morphometry. Neuroimage 2019
Gergely D, Mohammadi S, Martin A, Cohen-Adad J, Weiskopf N, Thompson A, Freund P. Traumatic and nontraumatic spinal cord injury: pathological insights from neuroimaging. Nat Rev Neurol 2019
Herranz E, Louapre C, Treaba CA, Govindarajan ST, Ouellette R, Mangeat G, Loggia ML, Cohen-Adad J, Klawiter EC, Sloane JA, Mainero C. Profiles of cortical inflammation in multiple sclerosis by 11C-PBR28 MR-PET and 7 Tesla imaging. Mult Scler 2019
Karbasforoushan H, Cohen-Adad J, Dewald JPA. Brainstem and spinal cord MRI identifies altered sensorimotor pathways post-stroke. Nat Commun 2019
Querin G, Bede P, El Mendili MM, Li M, Pélégrini-Issac M, Rinaldi D, Catala M, Saracino D, Salachas F, Camuzat A, Marchand-Pauvert V, Cohen-Adad J, Colliot O, Le Ber I, Pradat P-F. Presymptomatic spinal cord pathology in c9orf72 mutation carriers: A longitudinal neuroimaging study. Ann Neurol 2019
Andica C, Hagiwara A, Kamagata K, Yokoyama K, Shimoji K, Saito A, Takenaka Y, Nakazawa M, Hori M, Cohen-Adad J, Takemura MY, Hattori N, Aoki S. Gray Matter Alterations in Early and Late Relapsing-Remitting Multiple Sclerosis Evaluated with Synthetic Quantitative Magnetic Resonance Imaging. Sci Rep 2019
Seif M, Gandini Wheeler-Kingshott CA, Cohen-Adad J, Flanders AE, Freund P. Guidelines for the conduct of clinical trials in spinal cord injury: Neuroimaging biomarkers. Spinal Cord 2019
Badji A, Sabra D, Bherer L, Cohen-Adad J, Girouard H, Gauthier C. Arterial stiffness and brain integrity: A review of MRI findings. Ageing Res Rev 2019
Paugam F, Lefeuvre J, Perone CS, Gros C, Reich DS, Sati P, Cohen-Adad J. Open-source pipeline for multi-class segmentation of the spinal cord with deep learning. Magn Reson Imaging 2019
Chougar L, Hagiwara A, Takano N, Andica C, Cohen-Adad J, Warntjes M, Maekawa T, Hori M, Koshino S, Nakazawa M, Abe O, Aoki S. Signal Intensity within Cerebral Venous Sinuses on Synthetic MRI. Magn Reson Med Sci 2019
McCoy DB, Dupont SM, Gros C, Cohen-Adad J, Huie RJ, Ferguson A, Duong-Fernandez X, Thomas LH, Singh V, Narvid J, Pascual L, Kyritsis N, Beattie MS, Bresnahan JC, Dhall S, Whetstone W, Talbott JF, Investigators T-S. Convolutional Neural Network-Based Automated Segmentation of the Spinal Cord and Contusion Injury: Deep Learning Biomarker Correlates of Motor Impairment in Acute Spinal Cord Injury. AJNR Am J Neuroradiol 2019
Perone CS, Cohen-Adad J. Promises and limitations of deep learning for medical image segmentation. Journal of Medical Artificial Intelligence 2019
Perone CS, Ballester P, Barros RC, Cohen-Adad J. Unsupervised domain adaptation for medical imaging segmentation with self-ensembling. Neuroimage 2019
Badji A, Noriega de la Colina A, Karakuzu A, Duval T, Desjardins-Crepeau L, Joubert S, Bherer L, Lamarre-Cliche M, Stikov N, Girouard H, Cohen-Adad J. Arterial stiffness and white matter integrity in the elderly: A diffusion tensor and magnetization transfer imaging study. Neuroimage 2019
Eden D, Gros C, Badji A, Dupont SM, De Leener B, Maranzano J, Zhuoquiong R, Liu Y, Granberg T, Ouellette R, Stawiarz L, Hillert J, Talbott J, Bannier E, Kerbrat A, Edan G, Labauge P, Callot V, Pelletier J, Audoin B, Rasoanandrianina H, Brisset JC, Valsasina P, Rocca MA, Filippi M, Bakshi R, Tauhid S, Prados F, Yiannakas M, Kearney H, Ciccarelli O, Smith S, Treaba CA, Mainero C, Lefeuvre J, Reich DS, Nair G, Shepherd T, Charlson E, Tachibana Y, Hori M, Kamiya K, Chougar L, Narayanan S, Cohen-Adad J. Spatial distribution of multiple sclerosis lesions in the cervical spinal cord. Brain 2019
Duval T, Saliani A, Nami H, Nanci A, Stikov N, Leblond H, Cohen-Adad J. Axons morphometry in the human spinal cord. Neuroimage 2019
Gros C, De Leener B, Badji A, Maranzano J, Eden D, Dupont SM, Talbott J, Zhuoquiong R, Liu Y, Granberg T, Ouellette R, Tachibana Y, Hori M, Kamiya K, Chougar L, Stawiarz L, Hillert J, Bannier E, Kerbrat A, Edan G, Labauge P, Callot V, Pelletier J, Audoin B, Rasoanandrianina H, Brisset JC, Valsasina P, Rocca MA, Filippi M, Bakshi R, Tauhid S, Prados F, Yiannakas M, Kearney H, Ciccarelli O, Smith S, Treaba CA, Mainero C, Lefeuvre J, Reich DS, Nair G, Auclair V, McLaren DG, Martin AR, Fehlings MG, Vahdat S, Khatibi A, Doyon J, Shepherd T, Charlson E, Narayanan S, Cohen-Adad J. Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks. Neuroimage 2019
Hagiwara A, Hori M, Cohen-Adad J, Nakazawa M, Suzuki Y, Kasahara A, Horita M, Haruyama T, Andica C, Maekawa T, Kamagata K, Kumamaru KK, Abe O, Aoki S. Linearity, Bias, Intrascanner Repeatability, and Interscanner Reproducibility of Quantitative Multidynamic Multiecho Sequence for Rapid Simultaneous Relaxometry at 3 T: A Validation Study With a Standardized Phantom and Healthy Controls. Invest Radiol 2019
Querin G, El Mendili MM, Lenglet T, Behin A, Stojkovic T, Salachas F, Devos D, Le Forestier N, Del Mar Amador M, Debs R, Lacomblez L, Meninger V, Bruneteau G, Cohen-Adad J, Lehéricy S, Laforêt P, Blancho S, Benali H, Catala M, Li M, Marchand-Pauvert V, Hogrel JY, Bede P, Pradat PF. The spinal and cerebral profile of adult spinal-muscular atrophy: A multimodal imaging study. Neuroimage Clin 2019
Lee L, Ljungberg E, Shin D, Figley C, Vavasour I, Rauscher A, Cohen-Adad J, Li D, Traboulsee A, MacKay A, Lee J, Kolind S. Inter-Vendor Reproducibility of Myelin Water Imaging Using a 3D Gradient and Spin Echo Sequence. Front Neurosci 2018
Cadotte DW, Akbar MA, Fehlings MG, Stroman PW, Cohen-Adad J. What Has Been Learned from Magnetic Resonance Imaging Examination of the Injured Human Spinal Cord: A Canadian Perspective. J Neurotrauma 2018
Lopez Rios N, Foias A, Lodygensky G, Dehaes M, Cohen-Adad J. Size-adaptable 13-channel receive array for brain MRI in human neonates at 3 T. NMR Biomed 2018
Calabrese E, Adil SM, Cofer G, Perone CS, Cohen-Adad J, Lad SP, Johnson GA. Postmortem diffusion MRI of the entire human spinal cord at microscopic resolution. Neuroimage Clin 2018
Martin AR, De Leener B, Cohen-Adad J, Kalsi-Ryan S, Cadotte DW, Wilson JR, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Massicotte EM, Fehlings MG. Monitoring for myelopathic progression with multiparametric quantitative MRI. PLoS ONE 2018
Perone CS, Calabrese E, Cohen-Adad J. Spinal cord gray matter segmentation using deep dilated convolutions. Sci Rep 2018
Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Nouri A, Wilson JR, Tetreault L, Crawley AP, Mikulis DJ, Ginsberg H, Fehlings MG. Can microstructural MRI detect subclinical tissue injury in subjects with asymptomatic cervical spinal cord compression? A prospective cohort study. BMJ Open 2018
Cohen-Adad J. Microstructural imaging in the spinal cord and validation strategies. Neuroimage 2018
Morozov D, Lopez Rios N, Duval T, Foias A, Cohen-Adad J. Effect of cardiac-related translational motion in diffusion MRI of the spinal cord. Magn Reson Imaging 2018
Zaimi A, Wabartha M, Herman V, Antonsanti P-L, Perone CS, Cohen-Adad J. AxonDeepSeg: automatic axon and myelin segmentation from microscopy data using convolutional neural networks. Sci Rep 2018
Mangeat G, Badji A, Ouellette R, Treaba CA, Herranz E, Granberg T, Louapre C, Stikov N, Sloane JA, Bellec P, Mainero C, Cohen-Adad J. Changes in structural network are associated with cortical demyelination in early multiple sclerosis. Hum Brain Mapp 2018
Albrecht DS, Ahmed SU, Kettner NW, Borra RJH, Cohen-Adad J, Deng H, Houle TT, Opalacz A, Roth SA, Melo MFV, Chen L, Mao J, Hooker JM, Loggia ML, Zhang Y. Neuroinflammation of the spinal cord and nerve roots in chronic radicular pain patients. Pain 2018
Topfer R, Foias A, Stikov N, Cohen-Adad J. Real-time correction of respiration-induced distortions in the human spinal cord using a 24-channel shim array. Magn Reson Med 2018
Lopez Rios N, Pouliot P, Papoutsis K, Foias A, Stikov N, Lesage F, Dehaes M, Cohen-Adad J. Design and construction of an optimized transmit/receive hybrid birdcage resonator to improve full body images of medium-sized animals in 7T scanner. PLoS ONE 2018
Levy S, Guertin MC, Khatibi A, Mezer A, Martinu K, Chen JI, Stikov N, Rainville P, Cohen-Adad J. Test-retest reliability of myelin imaging in the human spinal cord: Measurement errors versus region- and aging-induced variations. PLoS ONE 2018
Gros C, De Leener B, Dupont SM, Martin AR, Fehlings MG, Bakshi R, Tummala S, Auclair V, McLaren DG, Callot V, Cohen-Adad J, Sdika M. Automatic spinal cord localization, robust to MRI contrasts using global curve optimization. Med Image Anal 2018
Duval T, Smith V, Stikov N, Klawiter EC, Cohen-Adad J. Scan-rescan of axcaliber, macromolecular tissue volume, and g-ratio in the spinal cord. Magn Reson Med 2018
Paquin ME, El Mendili MM, Gros C, Dupont SM, Cohen-Adad J, Pradat PF. Spinal Cord Gray Matter Atrophy in Amyotrophic Lateral Sclerosis. AJNR Am J Neuroradiol 2018
Campbell JSW, Leppert IR, Narayanan S, Boudreau M, Duval T, Cohen-Adad J, Pike GB, Stikov N. Promise and pitfalls of g-ratio estimation with MRI. Neuroimage 2018
De Leener B, Fonov VS, Collins DL, Callot V, Stikov N, Cohen-Adad J. PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space. Neuroimage 2018
De Tillieux P, Topfer R, Foias A, Leroux I, El Maachi I, Leblond H, Stikov N, Cohen-Adad J. A pneumatic phantom for mimicking respiration-induced artifacts in spinal MRI. Magn Reson Med 2018
Saliani A, Perraud B, Duval T, Stikov N, Rossignol S, Cohen-Adad J. Axon and Myelin Morphology in Animal and Human Spinal Cord. Front Neuroanat 2017
Mingasson T, Duval T, Stikov N, Cohen-Adad J. AxonPacking: An Open-Source Software to Simulate Arrangements of Axons in White Matter. Front Neuroinform 2017
Granberg T, Fan Q, Treaba CA, Ouellette R, Herranz E, Mangeat G, Louapre C, Cohen-Adad J, Klawiter EC, Sloane JA, Mainero C. In vivo characterization of cortical and white matter neuroaxonal pathology in early multiple sclerosis. Brain 2017
Khoshnejad M, Roy M, Martinu K, Chen JI, Cohen-Adad J, Grondin S, Rainville P. Brain processing of the temporal dimension of acute pain in short-term memory. Pain 2017
Prados F, Ashburner J, Blaiotta C, Brosch T, Carballido-Gamio J, Cardoso MJ, Conrad BN, Datta E, Dávid G, Leener BD, Dupont SM, Freund P, Wheeler-Kingshott CAMG, Grussu F, Henry R, Landman BA, Ljungberg E, Lyttle B, Ourselin S, Papinutto N, Saporito S, Schlaeger R, Smith SA, Summers P, Tam R, Yiannakas MC, Zhu A, Cohen-Adad J. Spinal cord grey matter segmentation challenge. Neuroimage 2017
Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Kalsi-Ryan S, Lange SF, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Fehlings MG. A Novel MRI Biomarker of Spinal Cord White Matter Injury: T2*-Weighted White Matter to Gray Matter Signal Intensity Ratio. AJNR Am J Neuroradiol 2017
Martin AR, De Leener B, Cohen-Adad J, Cadotte DW, Kalsi-Ryan S, Lange SF, Tetreault L, Nouri A, Crawley A, Mikulis DJ, Ginsberg H, Fehlings MG. Clinically Feasible Microstructural MRI to Quantify Cervical Spinal Cord Tissue Injury Using DTI, MT, and T2*-Weighted Imaging: Assessment of Normative Data and Reliability. AJNR Am J Neuroradiol 2017
De Leener B, Mangeat G, Dupont S, Martin AR, Callot V, Stikov N, Fehlings MG, Cohen-Adad J. Topologically preserving straightening of spinal cord MRI. J Magn Reson Imaging 2017
McCoy DB, Talbott JF, Wilson M, Mamlouk M, Cohen-Adad J, Wilson M, Narvid J. MRI Atlas-Based Measurement of Spinal Cord Injury Predicts Outcome in Acute Flaccid Myelitis. AJNR Am J Neuroradiol 2017
De Leener B, Lévy S, Dupont SM, Fonov VS, Stikov N, Louis Collins D, Callot V, Cohen-Adad J. SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data. Neuroimage 2017
Cohen-Adad J. Functional Magnetic Resonance Imaging of the Spinal Cord: Current Status and Future Developments. Semin Ultrasound CT MR 2017
Duval T, Lévy S, Stikov N, Campbell J, Mezer A, Witzel T, Keil B, Smith V, Wald LL, Klawiter E, Cohen-Adad J. g-Ratio weighted imaging of the human spinal cord in vivo. Neuroimage 2017
Dupont SM, De Leener B, Taso M, Le Troter A, Nadeau S, Stikov N, Callot V, Cohen-Adad J. Fully-integrated framework for the segmentation and registration of the spinal cord white and gray matter. Neuroimage 2017
Duval T, Stikov N, Cohen-Adad J. Modeling white matter microstructure. Funct Neurol 2016
Zaimi A, Duval T, Gasecka A, Côté D, Stikov N, Cohen-Adad J. AxonSeg: open source software for axon and myelin segmentation and morphometric analysis. Front Neuroinform 2016
Topfer R, Starewicz P, Lo KM, Metzemaekers K, Jette D, Hetherington HP, Stikov N, Cohen-Adad J. A 24-channel shim array for the human spinal cord: Design, evaluation, and application. Magn Reson Med 2016
Craddock CR, S Margulies D, Bellec P, Nolan Nichols B, Alcauter S, A Barrios F, Burnod Y, J Cannistraci C, Cohen-Adad J, De Leener B, Dery S, Downar J, Dunlop K, R Franco A, Seligman Froehlich C, J Gerber A, S Ghosh S, J Grabowski T, Hill S, Sólon Heinsfeld A, Matthew Hutchison R, Kundu P, R Laird A, Liew SL, J Lurie D, G McLaren D, Meneguzzi F, Mennes M, Mesmoudi S, O’Connor D, H Pasaye E, Peltier S, Poline JB, Prasad G, Fraga Pereira R, Quirion PO, Rokem A, S Saad Z, Shi Y, C Strother S, Toro R, Q Uddin L, D Van Horn J, W Van Meter J, C Welsh R, Xu T. Brainhack: a collaborative workshop for the open neuroscience community. Gigascience 2016
Samson RS, Levy S, Schneider T, Smith AK, Smith SA, Cohen-Adad J, Gandini Wheeler-Kingshott CA. ZOOM or Non-ZOOM? Assessing Spinal Cord Diffusion Tensor Imaging Protocols for Multi-Centre Studies. PLoS ONE 2016
De Leener B, Taso M, Cohen-Adad J, Callot V. Segmentation of the human spinal cord. MAGMA 2016
Louapre C, Govindarajan ST, Gianni C, Cohen-Adad J, Gregory MD, Nielsen AS, Madigan N, Sloane JA, Kinkel RP, Mainero C. Is the Relationship between Cortical and White Matter Pathologic Changes in Multiple Sclerosis Spatially Specific? A Multimodal 7-T and 3-T MR Imaging Study with Surface and Tract-based Analysis. Radiology 2016
Cabana J-F, Gu Y, Boudreau M, Levesque IR, Atchia Y, Sled JG, Narayanan S, Arnold DL, Pike GB, Cohen-Adad J, Duval T, Vuong M-T, Stikov N. Quantitative magnetization transfer imaging made easy with qMTLab: Software for data simulation, analysis, and visualization. Concepts in Magnetic Resonance Part A 2016
Martin AR, Aleksanderek I, Cohen-Adad J, Tarmohamed Z, Tetreault L, Smith N, Cadotte DW, Crawley AP, Ginsberg H, Mikulis D, Fehlings MG. Translating state-of-the-art spinal cord MRI techniques to clinical use: A systematic review of clinical studies utilizing DTI, MT, MWF, MRS, and fMRI. Neuroimage Clin 2015
Yiannakas MC, Mustafa A, De Leener B, Kearney H, Tur C, Altmann DR, De Angelis F, Plantone D, Ciccarelli O, Miller DH, Cohen-Adad J, Wheeler-Kingshott C. Fully automated segmentation of the cervical cord from T1-weighted MRI using PropSeg: Application to multiple sclerosis. Neuroimage Clin 2015
Cadotte A, Cadotte DW, Livne M, Cohen-Adad J, Fleet D, Mikulis D, Fehlings MG. Spinal Cord Segmentation by One Dimensional Normalized Template Matching: A Novel, Quantitative Technique to Analyze Advanced Magnetic Resonance Imaging Data. PLoS ONE 2015
Stikov N, Campbell JS, Stroh T, Lavelee M, Frey S, Novek J, Nuara S, Ho MK, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Duval T, Cohen-Adad J, Picard PA, Gasecka A, Cote D, Pike GB. Quantitative analysis of the myelin g-ratio from electron microscopy images of the macaque corpus callosum. Data Brief 2015
Stikov N, Campbell JS, Stroh T, Lavelee M, Frey S, Novek J, Nuara S, Ho MK, Bedell BJ, Dougherty RF, Leppert IR, Boudreau M, Narayanan S, Duval T, Cohen-Adad J, Picard PA, Gasecka A, Cote D, Pike GB. In vivo histology of the myelin g-ratio with magnetic resonance imaging. Neuroimage 2015
Eichner C, Cauley SF, Cohen-Adad J, Moller HE, Turner R, Setsompop K, Wald LL. Real diffusion-weighted MRI enabling true signal averaging and increased diffusion contrast. Neuroimage 2015
Levy S, Benhamou M, Naaman C, Rainville P, Callot V, Cohen-Adad J. White matter atlas of the human spinal cord with estimation of partial volume effect. Neuroimage 2015
Duval T, McNab JA, Setsompop K, Witzel T, Schneider T, Huang SY, Keil B, Klawiter EC, Wald LL, Cohen-Adad J. In vivo mapping of human spinal cord microstructure at 300mT/m. Neuroimage 2015
Mangeat G, Govindarajan ST, Mainero C, Cohen-Adad J. Multivariate combination of magnetization transfer, T2* and B0 orientation to study the myelo-architecture of the in vivo human cortex. Neuroimage 2015
De Leener B, Cohen-Adad J, Kadoury S. Automatic segmentation of the spinal cord and spinal canal coupled with vertebral labeling. IEEE Trans Med Imaging 2015
Taso M, Le Troter A, Sdika M, Cohen-Adad J, Arnoux PJ, Guye M, Ranjeva JP, Callot V. A reliable spatially normalized template of the human spinal cord–Applications to automated white matter/gray matter segmentation and tensor-based morphometry (TBM) mapping of gray matter alterations occurring with age. Neuroimage 2015
Vahdat S, Lungu O, Cohen-Adad J, Marchand-Pauvert V, Benali H, Doyon J. Simultaneous Brain-Cervical Cord FMRI Reveals Intrinsic Spinal Cord Plasticity during Motor Sequence Learning. PLoS Biol 2015
Gagnon L, Sakadzic S, Lesage F, Musacchia JJ, Lefebvre J, Fang Q, Yucel MA, Evans KC, Mandeville ET, Cohen-Adad J, Polimeni JR, Yaseen MA, Lo EH, Greve DN, Buxton RB, Dale AM, Devor A, Boas DA. Quantifying the microvascular origin of BOLD-fMRI from first principles with two-photon microscopy and an oxygen-sensitive nanoprobe. J Neurosci 2015
Farooq H, Genis H, Alarcon J, Vuong B, Jivraj J, Yang VXD, Cohen-Adad J, Fehlings MG, Cadotte A. High resolution imaging of the central nervous system: how novel imaging methods combined with navigation strategies will advance patient care. Prog Brain Res 2015
Mainero C, Louapre C, Govindarajan ST, Gianni C, Nielsen AS, Cohen-Adad J, Sloane J, Kinkel RP. A gradient in cortical pathology in multiple sclerosis by in vivo quantitative 7 T imaging. Brain 2015
Huang SY, Nummenmaa A, Witzel T, Duval T, Cohen-Adad J, Wald LL, McNab JA. The impact of gradient strength on in vivo diffusion MRI estimates of axon diameter. Neuroimage 2015
Govindarajan ST, Cohen-Adad J, Sormani MP, Fan AP, Louapre C, Mainero C. Reproducibility of T2* mapping in the human cerebral cortex in vivo at 7 Tesla MRI. J Magn Reson Imaging 2015
Cadotte DW, Cadotte A, Cohen-Adad J, Fleet D, Livne M, Wilson JR, Mikulis D, Nugaeva N, Fehlings MG. Characterizing the location of spinal and vertebral levels in the human cervical spinal cord. AJNR Am J Neuroradiol 2015
Hendrix P, Griessenauer CJ, Cohen-Adad J, Rajasekaran S, Cauley KA, Shoja MM, Pezeshk P, Shane Tubbs R. Spinal diffusion tensor imaging: A comprehensive review with emphasis on spinal cord anatomy and clinical applications. Clin Anat 2015
El Mendili MM, Chen R, Tiret B, Pelegrini-Issac M, Cohen-Adad J, Lehericy S, Pradat PF, Benali H. Validation of a semiautomated spinal cord segmentation method. J Magn Reson Imaging 2015
Fonov VS, Le Troter A, Taso M, De Leener B, Leveque G, Benhamou M, Sdika M, Benali H, Pradat PF, Collins DL, Callot V, Cohen-Adad J. Framework for integrated MRI average of the spinal cord white and gray matter: the MNI-Poly-AMU template. Neuroimage 2014
Cohen-Adad J, Martinez M, Delivet-Mongrain H, Rossignol S. Recovery of locomotion after partial spinal cord lesions in cats: assessment using behavioral, electrophysiological and imaging techniques. Acta Neurobiol Exp (Wars) 2014
Ullmann E, Thong W, Pelletier Paquette JP, Cohen-Adad J. Automatic labeling of vertebral levels using a robust template-based approach. Int J Biomed Imaging 2014
El Mendili MM, Cohen-Adad J, Pelegrini-Issac M, Rossignol S, Morizot-Koutlidis R, Marchand-Pauvert V, Iglesias C, Sangari S, Katz R, Lehericy S, Benali H, Pradat PF. Multi-parametric spinal cord MRI as potential progression marker in amyotrophic lateral sclerosis. PLoS ONE 2014
De Leener B, Kadoury S, Cohen-Adad J. Robust, accurate and fast automatic segmentation of the spinal cord. Neuroimage 2014
Verma T, Cohen-Adad J. Effect of respiration on the B0 field in the human spinal cord at 3T. Magn Reson Med 2014
Zhao W, Cohen-Adad J, Polimeni JR, Keil B, Guerin B, Setsompop K, Serano P, Mareyam A, Hoecht P, Wald LL. Nineteen-channel receive array and four-channel transmit array coil for cervical spinal cord imaging at 7T. Magn Reson Med 2014
Wheeler-Kingshott CA, Stroman PW, Schwab JM, Bacon M, Bosma R, Brooks J, Cadotte DW, Carlstedt T, Ciccarelli O, Cohen-Adad J, Curt A, Evangelou N, Fehlings MG, Filippi M, Kelley BJ, Kollias S, Mackay A, Porro CA, Smith S, Strittmatter SM, Summers P, Thompson AJ, Tracey I. The current state-of-the-art of spinal cord imaging: applications. Neuroimage 2014
Stroman PW, Wheeler-Kingshott C, Bacon M, Schwab JM, Bosma R, Brooks J, Cadotte D, Carlstedt T, Ciccarelli O, Cohen-Adad J, Curt A, Evangelou N, Fehlings MG, Filippi M, Kelley BJ, Kollias S, Mackay A, Porro CA, Smith S, Strittmatter SM, Summers P, Tracey I. The current state-of-the-art of spinal cord imaging: methods. Neuroimage 2014
Cohen-Adad J. What can we learn from T2* maps of the cortex?. Neuroimage 2014
Stikov N, Boudreau M, Tardif CL, Levesque IR, Barral JK, Pike GB. On the Accuracy of T1 Mapping: Searching for Common Ground.. Magnetic Resonance in Medicine 2014
Satpute A, Wager T, Cohen-Adad J, Bianciardi M, Choi J-K, Buhle J, Wald LL, Fedman Barret L. Identification of discrete functional subregions of the human periaqueductal gray. Proc Natl Acad Sci U S A 2013
Setsompop K, Kimmlingen R, Eberlein E, Witzel T, Cohen-Adad J, McNab JA, Keil B, Tisdall MD, Hoecht P, Dietz P, Cauley SF, Tountcheva V, Matschl V, Lenz H, Bhat H, Heberlein K, Potthast A, Thein H, Van Horn JD, Toga AW, Schmitt F, Lehne D, Rosen BR, Wedeen VJ, Wald LL. Pushing the limits of in vivo diffusion MRI for the Human Connectome Project. NeuroImage 2013
McNab JA, Edlow BL, Witzel T, Huang SY, Bhat H, Heberlein K, Feiweier T, Liu K, Keil B, Cohen-Adad J, Tisdall MD, Folkerth RD, Kinney HC, Wald LL. The Human Connectome Project and beyond: initial applications of 300 mT/m gradients. NeuroImage 2013
Cadotte DW, Cohen-Adad J, Fehlings MG. Visualizing integrative functioning in the human brainstem and spinal cord with spinal functional magnetic resonance imaging. Clinical Neurosurgery 2013
Cohen-Adad J, El Mendili MM, Morizot-Koutlidis R, Lehericy S, Meininger V, Blancho S, Rossignol S, Benali H, Pradat P-F. Involvement of spinal sensory pathway in ALS and specificity of cord atrophy to lower motor neuron degeneration. Amyotroph Lateral Scler Frontotemporal Degener 2013
Lundell H, Barthelemy D, Biering-Sorensen F, Cohen-Adad J, Nielsen JB, Dyrby TB. Fast diffusion tensor imaging and tractography of the whole cervical spinal cord using point spread function corrected echo planar imaging. Magn Reson Med 2013
Cohen-Adad J, Zhao W, Keil B, Ratai E-M, Triantafyllou C, Lawson R, Dheel C, Wald LL, Rosen BR, Cudkowicz M, Atassi N. 7-T MRI of the spinal cord can detect lateral corticospinal tract abnormality in amyotrophic lateral sclerosis. Muscle Nerve 2013
Mezer AA, Yeatman J, Stikov N, Kay K, Cho N, Dougherty RF, Perry LM, Parvizi J, Hua LH, Butts-Pauly K, Wandell BA. Measuring within the Voxel: Brain Tissue Volume in Individual Subjects.. Nature Medicine 2013
Bilgic B, Setsompop K, Cohen-Adad J, Yendiki A, Wald LL, Adalsteinsson E. Accelerated diffusion spectrum imaging with compressed sensing using adaptive dictionaries. Magn Reson Med 2012
Cohen-Adad J, Zhao W, Wald LL, Oaklander AL. 7T MRI of spinal cord injury. Neurology 2012
Cohen-Adad J, Buchbinder B, Oaklander AL. Cervical spinal cord injection of epidural corticosteroids: comprehensive longitudinal study including multiparametric magnetic resonance imaging. Pain 2012
Xie G, Piche M, Khoshejad M, Perlbarg V, Chen J-I, Hoge RD, Benali H, Rossignol S, Rainville P, Cohen-Adad J. Reduction of physiological noise with independent component analysis improves the detection of nociceptive responses with fMRI of the human spinal cord. NeuroImage 2012
Setsompop K, Cohen-Adad J, Gagoski BA, Raij T, Yendiki A, Keil B, Wedeen VJ, Wald LL. Improving diffusion MRI using simultaneous multi-slice echo planar imaging. Neuroimage 2012
Cohen-Adad J, Polimeni JR, Helmer KG, Benner T, McNab JA, Wald LL, Rosen B, Mainero C. T2* mapping and B0 orientation-dependence at 7T reveal cyto- and myeloarchitecture organization of the human cortex. Neuroimage 2012
Nielsen AS, Kinkel RP, Tinelli E, Benner T, Cohen-Adad J, Mainero C. Focal cortical lesion detection in multiple sclerosis: 3 Tesla DIR versus 7 Tesla FLASH-T2. J Magn Reson Imaging 2012
Stikov N. Improving the Accuracy of Cross-relaxation Imaging. International Journal of Imaging Systems and Technology 2012
Cheng HLM, Stikov N, Ghugre N, Wright GA. Practical Clinical Applications of MR relaxometry. Journal of Magnetic Resonance Imaging 2012
Sharman M, Cohen-Adad J, Descoteaux M, Messé A, Benali H, Lehericy S. Impact of outliers on diffusion tensor and Q-ball imaging: clinical implications and correction strategies. J Magn Reson Imaging 2011
Cohen-Adad J, Leblond H, Delivet-Mongrain H, Martinez M, Benali H, Rossignol S. Wallerian degeneration after spinal cord lesions in cats detected with diffusion tensor imaging. Neuroimage 2011
Cohen-Adad J, El Mendili M-M, Lehéricy S, Pradat P-F, Blancho S, Rossignol S, Benali H. Demyelination and degeneration in the injured human spinal cord detected with diffusion and magnetization transfer MRI. Neuroimage 2011
Cohen-Adad J, Mareyam A, Keil B, Polimeni JR, Wald LL. 32-channel RF coil optimized for brain and cervical spinal cord at 3 T. Magn Reson Med 2011
Cohen-Adad J, Descoteaux M, Wald LL. Quality assessment of high angular resolution diffusion imaging data using bootstrap on Q-ball reconstruction. J Magn Reson Imaging 2011
Cohen-Adad J, Benner T, Greve DN, Kinkel RP, Radding A, Fischl B, Rosen BR, Mainero C. In vivo evidence of disseminated subpial T2* signal changes in multiple sclerosis at 7 T: a surface-based analysis. Neuroimage 2011
Stikov N, Perry LM, Ryklevskaya E, Mezer A, Wandell BA, Pauly JM, Dougherty RF. Bound Pool Fractions Complement Diffusion Measures in Characterizing White Matter Micro and Macrostructure. Neuroimage 2011
Miller KL, Tijssen RHN, Stikov N, Okell. Steady-state MRI: Methods for Neuroimaging.. Imaging in Medicine 2011
Barral JK, Gudmundson E, Stikov N, Etezadi-Amoli M, Stoica P, Nishimura DG. A Robust Methodology for T1 Mapping. Magnetic Resonance in Medicine 2010
Onu M, Gervai P, Cohen-Adad J, Lawrence J, Kornelsen J, Tomanek B, Sboto-Frankenstein UN. Human cervical spinal cord funiculi: investigation with magnetic resonance diffusion tensor imaging. J Magn Reson Imaging 2010
Brieu N, Beaumont E, Dubeau S, Cohen-Adad J, Lesage F. Characterization of the hemodynamic response in the vivo rat lumbar spinal cord by intrinsic optical imaging and laser speckle microscopy. J Neurosci Methods 2010
Cohen-Adad J, Gauthier CJ, Brooks JCW, Slessarev M, Han J, Fisher JA, Rossignol S, Hoge RD. BOLD signal responses to controlled hypercapnia in human spinal cord. Neuroimage 2010
Piché M, Cohen-Adad J, Nejad MK, Perlbarg V, Xie G, Beaudoin G, Benali H, Rainville P. Characterization of cardiac-related noise in fMRI of the cervical spinal cord. Magn Reson Imaging 2009
Cohen-Adad J, Hoge RD, Leblond H, Xie G, Beaudoin G, Song AW, Krueger G, Doyon J, Benali H, Rossignol S. Investigations on spinal cord fMRI of cats under ketamine. Neuroimage 2009
Cohen-Adad J, Descoteaux M, Rossignol S, Hoge RD, Deriche R, Benali H. Detection of multiple pathways in the spinal cord using q-ball imaging. Neuroimage 2008
Cohen-Adad J, Benali H, Hoge RD, Rossignol S. In vivo DTI of the healthy and injured cat spinal cord at high spatial and angular resolution. Neuroimage 2008
Cohen-Adad J, Benali H, Barrière G, Leblond H, Hoge RD, Rossignol S. Development of clinical diffusion tensor MRI of the spinal cord in a context of spinal cord injury. IRBM 2008
Cohen-Adad J, Chapuisat S, Doyon J, Rossignol S, Lina JM, Benali H, Lesage F. Activation detection in diffuse optical imaging by means of the general linear model. Med Image Anal 2007

Book Chapters#

Chen JJ and Cohen-Adad J. Functional Magnetic Resonance Imaging, Encyclopedia of Biomedical Engineering, Elsevier, 2017.
Martin AR, Cohen-Adad J, Fehlings MG. Magnetic Resonance Imaging of the Injured Spinal Cord: The Present and the Future. AOS Masters Series SCI Textbook: Thieme; 2015.
Cohen-Adad J, Wald LL. Coil arrays. In: Cohen-Adad J, Wheeler-Kingshott C, editors. Quantitative MRI of the Spinal Cord. San Diego: Elsevier; 2014
Ellingson BM, Cohen-Adad J. Diffusion-weighted imaging. In: Cohen-Adad J, Wheeler-Kingshott C, editors. Quantitative MRI of the Spinal Cord. San Diego: Elsevier; 2014
Summers P, Brooks JCW, Cohen-Adad J. Spinal cord fMRI. In: Cohen-Adad J, Wheeler-Kingshott C, editors. Quantitative MRI of the Spinal Cord. San Diego: Elsevier; 2014